Difference between revisions of "TSS:Hg 101414.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=58 |entrez_id=3376 |gc_percent=0.656716 |gene_alias=GRIDHH|IARS1|ILERS|ILRS|IRS|PRO0785 |gene_description=isoleucyl-tRNA synthet...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |IARS1= | ||
| + | |ILERS= | ||
| + | |ILRS= | ||
| + | |IRS= | ||
| + | |PRO0785= | ||
| + | |all_trans=ENST00000375643.7:0 ENST00000443024.6:0 ENST00000447699.6:0 ENST00000395554.7:0 ENST00000490438.1:0 uc004art.4:0 uc064ugz.1:0 uc010mqr.5:0 uc064uhg.1:0 uc064uhi.1:0 BX647236:0 BX647430:0 BX537417:0 BX647071:0 BX648567:0 AK293014:0 U04953:0 AK301272:0 BX537429:0 BX538109:0 AK308202:0 D28473:1 AB209234:10 ENST00000627121.2:-34 ENST00000430417.1:34 NM_013417:-34 NM_002161:-34 NR_073446:-34 uc064ugy.1:-34 uc064uhj.1:34 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| + | |distance=0 | ||
|distance_to_tss=58 | |distance_to_tss=58 | ||
| + | |end=92293722 | ||
|entrez_id=3376 | |entrez_id=3376 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=GRIDHH|IARS1|ILERS|ILRS|IRS|PRO0785 | |gene_alias=GRIDHH|IARS1|ILERS|ILRS|IRS|PRO0785 | ||
|gene_description=isoleucyl-tRNA synthetase | |gene_description=isoleucyl-tRNA synthetase | ||
| − | |gene_name=IARS | + | |gene_id=3376 |
| + | |gene_name=isoleucyl-tRNA synthetase | ||
| + | |gene_source=HGNC:5330 | ||
| + | |gene_symbol=IARS | ||
| + | |gene_synonyms=IARS1 ILRS | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5330 | ||
|nearest_ensembl=ENSG00000196305 | |nearest_ensembl=ENSG00000196305 | ||
|nearest_promoter_id=NM_013417 | |nearest_promoter_id=NM_013417 | ||
|nearest_refseq=NM_002161 | |nearest_refseq=NM_002161 | ||
|nearest_unigene=Hs.445403 | |nearest_unigene=Hs.445403 | ||
| + | |num_trans=30 | ||
| + | |species=human | ||
| + | |start=92293674 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000375643.7 ENST00000443024.6 ENST00000447699.6 ENST00000395554.7 ENST00000490438.1 uc004art.4 uc064ugz.1 uc010mqr.5 uc064uhg.1 uc064uhi.1 BX647236 BX647430 BX537417 BX647071 BX648567 AK293014 U04953 AK301272 BX537429 BX538109 AK308202 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101414.1 | |tss_id=hg_101414.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0A0MSX9 B4DVX2 J3KR24 P41252 Q5TCD1 Q7Z355 Q7Z3U5 | ||
}} | }} | ||
Revision as of 18:42, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000375643.7 ENST00000443024.6 ENST00000447699.6 ENST00000395554.7 ENST00000490438.1 uc004art.4 uc064ugz.1 uc010mqr.5 uc064uhg.1 uc064uhi.1 BX647236 BX647430 BX537417 BX647071 BX648567 AK293014 U04953 AK301272 BX537429 BX538109 AK308202 |
|---|---|
| Distance: | 0 |
| Num_trans: | 30 |
| All_trans: | ENST00000375643.7:0 ENST00000443024.6:0 ENST00000447699.6:0 ENST00000395554.7:0 ENST00000490438.1:0 uc004art.4:0 uc064ugz.1:0 uc010mqr.5:0 uc064uhg.1:0 uc064uhi.1:0 BX647236:0 BX647430:0 BX537417:0 BX647071:0 BX648567:0 AK293014:0 U04953:0 AK301272:0 BX537429:0 BX538109:0 AK308202:0 D28473:1 AB209234:10 ENST00000627121.2:-34 ENST00000430417.1:34 NM_013417:-34 NM_002161:-34 NR_073446:-34 uc064ugy.1:-34 uc064uhj.1:34 |
TATA-Box annotation
| Distance to TSS: | 58 |
|---|---|
| Nearest PromoterID: | NM_013417 |
| Entrez ID: | 3376 |
| Nearest Unigene: | Hs.445403 |
| Nearest Refseq: | NM_002161 |
| Nearest Ensembl: | ENSG00000196305 |
| Gene Name: | isoleucyl-tRNA synthetase |
| Gene Alias: | GRIDHH |
| Gene Description: | isoleucyl-tRNA synthetase |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
