Difference between revisions of "TSS:Hg 101427.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=220 |entrez_id=4958 |gc_percent=0.308458 |gene_alias=OSAD|SLRR2C |gene_description=osteomodulin |gene_name=OMD |gene_type=prote...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SLRR2C= | ||
| + | |all_trans=AB000114:24 AK313055:-26 AK225922:-33 AY358872:-86 BC046356:-89 ENST00000375550.4:-95 uc004asd.5:-95 NM_005014:-188 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=24 | ||
|distance_to_tss=220 | |distance_to_tss=220 | ||
| + | |end=92424366 | ||
|entrez_id=4958 | |entrez_id=4958 | ||
|gc_percent=0.308458 | |gc_percent=0.308458 | ||
|gene_alias=OSAD|SLRR2C | |gene_alias=OSAD|SLRR2C | ||
|gene_description=osteomodulin | |gene_description=osteomodulin | ||
| − | |gene_name=OMD | + | |gene_id=4958 |
| + | |gene_name=osteomodulin | ||
| + | |gene_source=HGNC:8134 | ||
| + | |gene_symbol=OMD | ||
| + | |gene_synonyms=SLRR2C osteoadherin | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8134 | ||
|nearest_ensembl=ENSG00000127083 | |nearest_ensembl=ENSG00000127083 | ||
|nearest_promoter_id=NM_005014 | |nearest_promoter_id=NM_005014 | ||
|nearest_refseq=NM_005014 | |nearest_refseq=NM_005014 | ||
|nearest_unigene=Hs.94070 | |nearest_unigene=Hs.94070 | ||
| + | |num_trans=8 | ||
| + | |species=human | ||
| + | |start=92424301 | ||
| + | |strand=- | ||
|tata_box="77(TCATTTAAAGGA,+,0.00)" | |tata_box="77(TCATTTAAAGGA,+,0.00)" | ||
| + | |transcript_name=AB000114 | ||
| + | |tss_classification=no | ||
|tss_id=hg_101427.1 | |tss_id=hg_101427.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:43, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AB000114 |
|---|---|
| Distance: | 24 |
| Num_trans: | 8 |
| All_trans: | AB000114:24 AK313055:-26 AK225922:-33 AY358872:-86 BC046356:-89 ENST00000375550.4:-95 uc004asd.5:-95 NM_005014:-188 |
TATA-Box annotation
| Distance to TSS: | 220 |
|---|---|
| Nearest PromoterID: | NM_005014 |
| Entrez ID: | 4958 |
| Nearest Unigene: | Hs.94070 |
| Nearest Refseq: | NM_005014 |
| Nearest Ensembl: | ENSG00000127083 |
| Gene Name: | osteomodulin |
| Gene Alias: | OSAD |
| Gene Description: | osteomodulin |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.308458 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "77(TCATTTAAAGGA,+,0.00)" |
