Difference between revisions of "TSS:Hg 101441.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=13 |entrez_id=1842 |gc_percent=0.348259 |gene_alias=- |gene_description=extracellular matrix protein 2 |gene_name=ECM2 |gene_type=p...") |
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{{TSSDetail | {{TSSDetail | ||
+ | |all_trans=ENST00000444490.6:-3 NM_001197296:-3 NM_001197295:-3 NM_001393:-3 uc004asf.5:-3 ENST00000344604.9:15 ENST00000375540.5:15 uc011lty.3:15 uc004asi.4:15 BX537976:15 AK296458:75 AK312820:80 AK303922:82 AB011792:100 | ||
+ | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
+ | |distance=-3 | ||
|distance_to_tss=13 | |distance_to_tss=13 | ||
+ | |end=92536089 | ||
|entrez_id=1842 | |entrez_id=1842 | ||
|gc_percent=0.348259 | |gc_percent=0.348259 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=extracellular matrix protein 2 | |gene_description=extracellular matrix protein 2 | ||
− | |gene_name=ECM2 | + | |gene_id=1842 |
+ | |gene_name=extracellular matrix protein 2 | ||
+ | |gene_source=HGNC:3154 | ||
+ | |gene_symbol=ECM2 | ||
+ | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
+ | |hgnc_mgi_id=HGNC:3154 | ||
|nearest_ensembl=ENSG00000106823 | |nearest_ensembl=ENSG00000106823 | ||
|nearest_promoter_id=NM_001197295 | |nearest_promoter_id=NM_001197295 | ||
|nearest_refseq=NM_001393 | |nearest_refseq=NM_001393 | ||
|nearest_unigene=Hs.117060 | |nearest_unigene=Hs.117060 | ||
+ | |num_trans=14 | ||
+ | |species=human | ||
+ | |start=92536069 | ||
+ | |strand=- | ||
|tata_box="60(GTTTTTAAAGAA,+,0.00)" | |tata_box="60(GTTTTTAAAGAA,+,0.00)" | ||
+ | |transcript_name=ENST00000444490.6 NM_001197296 NM_001197295 NM_001393 uc004asf.5 | ||
+ | |tss_classification=yes | ||
|tss_id=hg_101441.1 | |tss_id=hg_101441.1 | ||
+ | |tss_score=1 | ||
+ | |uniprot_id=O94769 | ||
}} | }} |
Revision as of 18:43, 8 March 2018
Basic information about the TSS
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Start of the center position in the TSS region: | |
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End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
Transcript_name: | ENST00000444490.6 NM_001197296 NM_001197295 NM_001393 uc004asf.5 |
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Distance: | -3 |
Num_trans: | 14 |
All_trans: | ENST00000444490.6:-3 NM_001197296:-3 NM_001197295:-3 NM_001393:-3 uc004asf.5:-3 ENST00000344604.9:15 ENST00000375540.5:15 uc011lty.3:15 uc004asi.4:15 BX537976:15 AK296458:75 AK312820:80 AK303922:82 AB011792:100 |
TATA-Box annotation
Distance to TSS: | 13 |
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Nearest PromoterID: | NM_001197295 |
Entrez ID: | 1842 |
Nearest Unigene: | Hs.117060 |
Nearest Refseq: | NM_001393 |
Nearest Ensembl: | ENSG00000106823 |
Gene Name: | extracellular matrix protein 2 |
Gene Alias: | - |
Gene Description: | extracellular matrix protein 2 |
Gene Type: | protein-coding |
CpG%: | 0 |
GC%: | 0.348259 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "60(GTTTTTAAAGAA,+,0.00)" |