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Difference between revisions of "TSS:Hg 101441.1"

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(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=13 |entrez_id=1842 |gc_percent=0.348259 |gene_alias=- |gene_description=extracellular matrix protein 2 |gene_name=ECM2 |gene_type=p...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|all_trans=ENST00000444490.6:-3 NM_001197296:-3 NM_001197295:-3 NM_001393:-3 uc004asf.5:-3 ENST00000344604.9:15 ENST00000375540.5:15 uc011lty.3:15 uc004asi.4:15 BX537976:15 AK296458:75 AK312820:80 AK303922:82 AB011792:100
 +
|chr=chr9
 
|cpg_percent=0
 
|cpg_percent=0
 +
|distance=-3
 
|distance_to_tss=13
 
|distance_to_tss=13
 +
|end=92536089
 
|entrez_id=1842
 
|entrez_id=1842
 
|gc_percent=0.348259
 
|gc_percent=0.348259
 
|gene_alias=-
 
|gene_alias=-
 
|gene_description=extracellular matrix protein 2
 
|gene_description=extracellular matrix protein 2
|gene_name=ECM2
+
|gene_id=1842
 +
|gene_name=extracellular matrix protein 2
 +
|gene_source=HGNC:3154
 +
|gene_symbol=ECM2
 +
|gene_synonyms=
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 +
|hgnc_mgi_id=HGNC:3154
 
|nearest_ensembl=ENSG00000106823
 
|nearest_ensembl=ENSG00000106823
 
|nearest_promoter_id=NM_001197295
 
|nearest_promoter_id=NM_001197295
 
|nearest_refseq=NM_001393
 
|nearest_refseq=NM_001393
 
|nearest_unigene=Hs.117060
 
|nearest_unigene=Hs.117060
 +
|num_trans=14
 +
|species=human
 +
|start=92536069
 +
|strand=-
 
|tata_box="60(GTTTTTAAAGAA,+,0.00)"
 
|tata_box="60(GTTTTTAAAGAA,+,0.00)"
 +
|transcript_name=ENST00000444490.6 NM_001197296 NM_001197295 NM_001393 uc004asf.5
 +
|tss_classification=yes
 
|tss_id=hg_101441.1
 
|tss_id=hg_101441.1
 +
|tss_score=1
 +
|uniprot_id=O94769
 
}}
 
}}

Revision as of 18:43, 8 March 2018

Basic information about the TSS


TSS ID:hg_101441.1
Species:human
Chr:chr9
TSS Classification:yes
Start:92536069
End:92536089
Strand:-
TSS Score:1
Start of the center position in the TSS region:
End of the center position in the TSS region:



Gene and protein annotation


Transcript_name:ENST00000444490.6 NM_001197296 NM_001197295 NM_001393 uc004asf.5
Distance:-3
GeneID:1842
HGNC/MGI_ID:HGNC:3154
UniProt_ID:O94769
Gene_name:extracellular matrix protein 2
Gene_symbol:ECM2
Gene_synonyms:
Gene_source:HGNC:3154



Transcript annotation


Transcript_name:ENST00000444490.6 NM_001197296 NM_001197295 NM_001393 uc004asf.5
Distance:-3
Num_trans:14
All_trans:ENST00000444490.6:-3 NM_001197296:-3 NM_001197295:-3 NM_001393:-3 uc004asf.5:-3 ENST00000344604.9:15 ENST00000375540.5:15 uc011lty.3:15 uc004asi.4:15 BX537976:15 AK296458:75 AK312820:80 AK303922:82 AB011792:100



TATA-Box annotation


Distance to TSS:13
Nearest PromoterID:NM_001197295
Entrez ID:1842
Nearest Unigene:Hs.117060
Nearest Refseq:NM_001393
Nearest Ensembl:ENSG00000106823
Gene Name:extracellular matrix protein 2
Gene Alias:-
Gene Description:extracellular matrix protein 2
Gene Type:protein-coding
CpG%:0
GC%:0.348259
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):"60(GTTTTTAAAGAA,+,0.00)"