Difference between revisions of "TSS:Hg 101496.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=95 |entrez_id=158293 |gc_percent=0.80597 |gene_alias=C9orf10OS |gene_description=family with sequence similarity 120A opposite...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000479094.5:0 ENST00000523407.1:0 ENST00000520403.1:0 uc004atn.5:0 uc064uki.1:0 uc064ukj.1:0 BC037551:0 BC063650:0 BC038803:0 BC080634:6 ENST00000423591.5:-24 ENST00000476484.5:-24 uc004atq.5:-24 uc064ukl.1:-24 BC046183:-26 DQ580956:176 ENST00000483056.5:272 uc064ukk.1:272 ENST00000428152.1:366 uc064ukm.1:366 ENST00000428378.1:497 uc064ukn.1:497 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=0 | ||
|distance_to_tss=95 | |distance_to_tss=95 | ||
| + | |end=93451538 | ||
|entrez_id=158293 | |entrez_id=158293 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
|gene_alias=C9orf10OS | |gene_alias=C9orf10OS | ||
|gene_description=family with sequence similarity 120A opposite strand | |gene_description=family with sequence similarity 120A opposite strand | ||
| − | |gene_name=FAM120AOS | + | |gene_id=158293 |
| + | |gene_name=family with sequence similarity 120A opposite strand | ||
| + | |gene_source=HGNC:23389 | ||
| + | |gene_symbol=FAM120AOS | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23389 | ||
|nearest_ensembl=ENSG00000188938 | |nearest_ensembl=ENSG00000188938 | ||
|nearest_promoter_id=NM_001322224 | |nearest_promoter_id=NM_001322224 | ||
|nearest_refseq=NM_198841 | |nearest_refseq=NM_198841 | ||
|nearest_unigene=Hs.350364 | |nearest_unigene=Hs.350364 | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=93451479 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000479094.5 ENST00000523407.1 ENST00000520403.1 uc004atn.5 uc064uki.1 uc064ukj.1 BC037551 BC063650 BC038803 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101496.1 | |tss_id=hg_101496.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:46, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000479094.5 ENST00000523407.1 ENST00000520403.1 uc004atn.5 uc064uki.1 uc064ukj.1 BC037551 BC063650 BC038803 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000479094.5:0 ENST00000523407.1:0 ENST00000520403.1:0 uc004atn.5:0 uc064uki.1:0 uc064ukj.1:0 BC037551:0 BC063650:0 BC038803:0 BC080634:6 ENST00000423591.5:-24 ENST00000476484.5:-24 uc004atq.5:-24 uc064ukl.1:-24 BC046183:-26 DQ580956:176 ENST00000483056.5:272 uc064ukk.1:272 ENST00000428152.1:366 uc064ukm.1:366 ENST00000428378.1:497 uc064ukn.1:497 |
TATA-Box annotation
| Distance to TSS: | 95 |
|---|---|
| Nearest PromoterID: | NM_001322224 |
| Entrez ID: | 158293 |
| Nearest Unigene: | Hs.350364 |
| Nearest Refseq: | NM_198841 |
| Nearest Ensembl: | ENSG00000188938 |
| Gene Name: | family with sequence similarity 120A opposite strand |
| Gene Alias: | C9orf10OS |
| Gene Description: | family with sequence similarity 120A opposite strand |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
