Difference between revisions of "TSS:Hg 101497.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.175 |distance_to_tss=21 |entrez_id=158293 |gc_percent=0.830846 |gene_alias=C9orf10OS |gene_description=family with sequence similarity 120A opposite...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000423591.5:0 ENST00000476484.5:0 uc004atq.5:0 uc064ukl.1:0 BC046183:0 ENST00000479094.5:23 ENST00000523407.1:23 uc004atn.5:23 uc064uki.1:23 BC038803:23 ENST00000520403.1:35 uc064ukj.1:35 BC037551:50 BC063650:50 BC080634:73 DQ580956:243 ENST00000483056.5:339 uc064ukk.1:339 ENST00000428152.1:433 uc064ukm.1:433 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
| + | |distance=0 | ||
|distance_to_tss=21 | |distance_to_tss=21 | ||
| + | |end=93451619 | ||
|entrez_id=158293 | |entrez_id=158293 | ||
|gc_percent=0.830846 | |gc_percent=0.830846 | ||
|gene_alias=C9orf10OS | |gene_alias=C9orf10OS | ||
|gene_description=family with sequence similarity 120A opposite strand | |gene_description=family with sequence similarity 120A opposite strand | ||
| − | |gene_name=FAM120AOS | + | |gene_id=158293 |
| + | |gene_name=family with sequence similarity 120A opposite strand | ||
| + | |gene_source=HGNC:23389 | ||
| + | |gene_symbol=FAM120AOS | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23389 | ||
|nearest_ensembl=ENSG00000188938 | |nearest_ensembl=ENSG00000188938 | ||
|nearest_promoter_id=NM_001322224 | |nearest_promoter_id=NM_001322224 | ||
|nearest_refseq=NM_198841 | |nearest_refseq=NM_198841 | ||
|nearest_unigene=Hs.350364 | |nearest_unigene=Hs.350364 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=93451546 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000423591.5 ENST00000476484.5 uc004atq.5 uc064ukl.1 BC046183 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101497.1 | |tss_id=hg_101497.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=E5RJ17 E9PCY8 | ||
}} | }} | ||
Revision as of 18:46, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000423591.5 ENST00000476484.5 uc004atq.5 uc064ukl.1 BC046183 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000423591.5:0 ENST00000476484.5:0 uc004atq.5:0 uc064ukl.1:0 BC046183:0 ENST00000479094.5:23 ENST00000523407.1:23 uc004atn.5:23 uc064uki.1:23 BC038803:23 ENST00000520403.1:35 uc064ukj.1:35 BC037551:50 BC063650:50 BC080634:73 DQ580956:243 ENST00000483056.5:339 uc064ukk.1:339 ENST00000428152.1:433 uc064ukm.1:433 |
TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_001322224 |
| Entrez ID: | 158293 |
| Nearest Unigene: | Hs.350364 |
| Nearest Refseq: | NM_198841 |
| Nearest Ensembl: | ENSG00000188938 |
| Gene Name: | family with sequence similarity 120A opposite strand |
| Gene Alias: | C9orf10OS |
| Gene Description: | family with sequence similarity 120A opposite strand |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.830846 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
