Difference between revisions of "TSS:Hg 101501.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=19 |entrez_id=158293 |gc_percent=0.522388 |gene_alias=C9orf10OS |gene_description=family with sequence similarity 120A opposite...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000375412.9:0 NM_198841:0 uc004atu.5:0 AK056096:0 ENST00000483149.6:284 ENST00000520470.5:284 uc004att.5:284 uc004ats.5:284 BC107135:284 BC107136:284 BC113074:284 AK309269:387 DQ599685:414 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| + | |distance=0 | ||
|distance_to_tss=19 | |distance_to_tss=19 | ||
| + | |end=93453606 | ||
|entrez_id=158293 | |entrez_id=158293 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
|gene_alias=C9orf10OS | |gene_alias=C9orf10OS | ||
|gene_description=family with sequence similarity 120A opposite strand | |gene_description=family with sequence similarity 120A opposite strand | ||
| − | |gene_name=FAM120AOS | + | |gene_id=158293 |
| + | |gene_name=family with sequence similarity 120A opposite strand | ||
| + | |gene_source=HGNC:23389 | ||
| + | |gene_symbol=FAM120AOS | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23389 | ||
|nearest_ensembl=ENSG00000188938 | |nearest_ensembl=ENSG00000188938 | ||
|nearest_promoter_id=NR_136230 | |nearest_promoter_id=NR_136230 | ||
|nearest_refseq=NM_198841 | |nearest_refseq=NM_198841 | ||
|nearest_unigene=Hs.350364 | |nearest_unigene=Hs.350364 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=93453540 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000375412.9 NM_198841 uc004atu.5 AK056096 | ||
| + | |tss_classification=no | ||
|tss_id=hg_101501.1 | |tss_id=hg_101501.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B3KPB1 Q5T036 | ||
}} | }} | ||
Revision as of 18:46, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000375412.9 NM_198841 uc004atu.5 AK056096 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000375412.9:0 NM_198841:0 uc004atu.5:0 AK056096:0 ENST00000483149.6:284 ENST00000520470.5:284 uc004att.5:284 uc004ats.5:284 BC107135:284 BC107136:284 BC113074:284 AK309269:387 DQ599685:414 |
TATA-Box annotation
| Distance to TSS: | 19 |
|---|---|
| Nearest PromoterID: | NR_136230 |
| Entrez ID: | 158293 |
| Nearest Unigene: | Hs.350364 |
| Nearest Refseq: | NM_198841 |
| Nearest Ensembl: | ENSG00000188938 |
| Gene Name: | family with sequence similarity 120A opposite strand |
| Gene Alias: | C9orf10OS |
| Gene Description: | family with sequence similarity 120A opposite strand |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
