Difference between revisions of "TSS:Hg 101611.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=6645 |entrez_id=100132781 |gc_percent=0.58209 |gene_alias=- |gene_description=cyclin Y like 1 pseudogene |gene_name=LOC100132781...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000289032.12:-22 uc064upe.1:-22 AK302460:-22 ENST00000498811.1:-71 uc064upi.1:-71 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |distance=-22 | ||
|distance_to_tss=6645 | |distance_to_tss=6645 | ||
| + | |end=96875552 | ||
|entrez_id=100132781 | |entrez_id=100132781 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=cyclin Y like 1 pseudogene | |gene_description=cyclin Y like 1 pseudogene | ||
| − | |gene_name= | + | |gene_id=158431 |
| + | |gene_name=zinc finger protein 782 | ||
| + | |gene_source=HGNC:33110 | ||
| + | |gene_symbol=ZNF782 | ||
| + | |gene_synonyms=FLJ16636 | ||
|gene_type=pseudo | |gene_type=pseudo | ||
| + | |hgnc_mgi_id=HGNC:33110 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_038890 | |nearest_promoter_id=NR_038890 | ||
|nearest_refseq=NR_038890 | |nearest_refseq=NR_038890 | ||
|nearest_unigene=Hs.710921 | |nearest_unigene=Hs.710921 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=96875538 | ||
| + | |strand=- | ||
|tata_box="-31(CCGTTTATAAAC,-,0.00)" | |tata_box="-31(CCGTTTATAAAC,-,0.00)" | ||
| + | |transcript_name=ENST00000289032.12 uc064upe.1 AK302460 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101611.1 | |tss_id=hg_101611.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DYI9 H0Y892 | ||
}} | }} | ||
Revision as of 18:51, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000289032.12 uc064upe.1 AK302460 |
|---|---|
| Distance: | -22 |
| Num_trans: | 5 |
| All_trans: | ENST00000289032.12:-22 uc064upe.1:-22 AK302460:-22 ENST00000498811.1:-71 uc064upi.1:-71 |
TATA-Box annotation
| Distance to TSS: | 6645 |
|---|---|
| Nearest PromoterID: | NR_038890 |
| Entrez ID: | 100132781 |
| Nearest Unigene: | Hs.710921 |
| Nearest Refseq: | NR_038890 |
| Nearest Ensembl: | |
| Gene Name: | zinc finger protein 782 |
| Gene Alias: | - |
| Gene Description: | cyclin Y like 1 pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.07 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-31(CCGTTTATAAAC,-,0.00)" |
