Difference between revisions of "TSS:Hg 101624.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=14834 |entrez_id=7111 |gc_percent=0.527363 |gene_alias=D9S57E|ETMOD|TMOD |gene_description=tropomodulin 1 |gene_name=TMOD1 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ETMOD= | ||
| + | |TMOD= | ||
| + | |all_trans=ENST00000451595.7:-226 uc064uqh.1:-226 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=-226 | ||
|distance_to_tss=14834 | |distance_to_tss=14834 | ||
| + | |end=97516480 | ||
|entrez_id=7111 | |entrez_id=7111 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| Line 12: | Line 18: | ||
|nearest_refseq=NM_003275 | |nearest_refseq=NM_003275 | ||
|nearest_unigene=Hs.404289 | |nearest_unigene=Hs.404289 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=97516465 | ||
| + | |strand=- | ||
|tata_box="32(GTCTTTAAAGCG,+,0.00),33(TCTTTAAAGCGC,+,0.00)" | |tata_box="32(GTCTTTAAAGCG,+,0.00),33(TCTTTAAAGCGC,+,0.00)" | ||
| + | |transcript_name=ENST00000451595.7 uc064uqh.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_101624.1 | |tss_id=hg_101624.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 18:51, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000451595.7 uc064uqh.1 |
|---|---|
| Distance: | -226 |
| Num_trans: | 2 |
| All_trans: | ENST00000451595.7:-226 uc064uqh.1:-226 |
TATA-Box annotation
| Distance to TSS: | 14834 |
|---|---|
| Nearest PromoterID: | NM_003275 |
| Entrez ID: | 7111 |
| Nearest Unigene: | Hs.404289 |
| Nearest Refseq: | NM_003275 |
| Nearest Ensembl: | ENSG00000136842 |
| Gene Name: | TMOD1 |
| Gene Alias: | D9S57E |
| Gene Description: | tropomodulin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "32(GTCTTTAAAGCG,+,0.00),33(TCTTTAAAGCGC,+,0.00)" |
