Difference between revisions of "TSS:Hg 101681.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=119 |entrez_id=55357 |gc_percent=0.726368 |gene_alias=PARIS-1|PARIS1|TBC1D2A |gene_description=TBC1 domain family member 2 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PARIS1= | ||
| + | |TBC1D2A= | ||
| + | |all_trans=ENST00000342112.9:0 uc004ayr.4:0 AK131290:0 ENST00000375064.5:10 uc064urv.1:10 AF318370:10 BC071978:-15 ENST00000375066.6:-18 uc004ayq.4:-18 AY026527:-18 AB449882:49 AB209721:69 ENST00000465784.6:-106 NM_001267571:-106 NM_018421:-106 NR_051978:-106 uc011lvb.3:-106 AK298575:198 CU687204:305 AK026105:379 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=0 | ||
|distance_to_tss=119 | |distance_to_tss=119 | ||
| + | |end=98255615 | ||
|entrez_id=55357 | |entrez_id=55357 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
|gene_alias=PARIS-1|PARIS1|TBC1D2A | |gene_alias=PARIS-1|PARIS1|TBC1D2A | ||
|gene_description=TBC1 domain family member 2 | |gene_description=TBC1 domain family member 2 | ||
| − | |gene_name=TBC1D2 | + | |gene_id=55357 |
| + | |gene_name=TBC1 domain family member 2 | ||
| + | |gene_source=HGNC:18026 | ||
| + | |gene_symbol=TBC1D2 | ||
| + | |gene_synonyms=Armus PARIS1 TBC1D2A | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18026 | ||
|nearest_ensembl=ENSG00000095383 | |nearest_ensembl=ENSG00000095383 | ||
|nearest_promoter_id=NM_001267571 | |nearest_promoter_id=NM_001267571 | ||
|nearest_refseq=NM_018421 | |nearest_refseq=NM_018421 | ||
|nearest_unigene=Hs.371016 | |nearest_unigene=Hs.371016 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=98255589 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000342112.9 uc004ayr.4 AK131290 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101681.1 | |tss_id=hg_101681.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B3KY99 Q9BYX2 | ||
}} | }} | ||
Revision as of 18:54, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000342112.9 uc004ayr.4 AK131290 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000342112.9:0 uc004ayr.4:0 AK131290:0 ENST00000375064.5:10 uc064urv.1:10 AF318370:10 BC071978:-15 ENST00000375066.6:-18 uc004ayq.4:-18 AY026527:-18 AB449882:49 AB209721:69 ENST00000465784.6:-106 NM_001267571:-106 NM_018421:-106 NR_051978:-106 uc011lvb.3:-106 AK298575:198 CU687204:305 AK026105:379 |
TATA-Box annotation
| Distance to TSS: | 119 |
|---|---|
| Nearest PromoterID: | NM_001267571 |
| Entrez ID: | 55357 |
| Nearest Unigene: | Hs.371016 |
| Nearest Refseq: | NM_018421 |
| Nearest Ensembl: | ENSG00000095383 |
| Gene Name: | TBC1 domain family member 2 |
| Gene Alias: | PARIS-1 |
| Gene Description: | TBC1 domain family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
