Difference between revisions of "TSS:Hg 101777.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=-20 |entrez_id=101928496 |gc_percent=0.363184 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1492 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000411575.5:2 uc004bbt.4:2 NR_121578:3 BC035187:6 ENST00000455051.2:258 uc064uwe.1:258 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=2 | ||
|distance_to_tss=-20 | |distance_to_tss=-20 | ||
| + | |end=103325070 | ||
|entrez_id=101928496 | |entrez_id=101928496 | ||
|gc_percent=0.363184 | |gc_percent=0.363184 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 1492 | |gene_description=long intergenic non-protein coding RNA 1492 | ||
| − | |gene_name=LINC01492 | + | |gene_id=101928496 |
| + | |gene_name=long intergenic non-protein coding RNA 1492 | ||
| + | |gene_source=HGNC:51149 | ||
| + | |gene_symbol=LINC01492 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:51149 | ||
|nearest_ensembl=ENSG00000225564 | |nearest_ensembl=ENSG00000225564 | ||
|nearest_promoter_id=NR_121578 | |nearest_promoter_id=NR_121578 | ||
|nearest_refseq=NR_121578 | |nearest_refseq=NR_121578 | ||
|nearest_unigene=Hs.410860 | |nearest_unigene=Hs.410860 | ||
| + | |num_trans=6 | ||
| + | |species=human | ||
| + | |start=103325035 | ||
| + | |strand=- | ||
|tata_box="83(CTTTATATACAG,+,0.00)" | |tata_box="83(CTTTATATACAG,+,0.00)" | ||
| + | |transcript_name=ENST00000411575.5 uc004bbt.4 | ||
| + | |tss_classification=no | ||
|tss_id=hg_101777.1 | |tss_id=hg_101777.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:58, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000411575.5 uc004bbt.4 |
|---|---|
| Distance: | 2 |
| Num_trans: | 6 |
| All_trans: | ENST00000411575.5:2 uc004bbt.4:2 NR_121578:3 BC035187:6 ENST00000455051.2:258 uc064uwe.1:258 |
TATA-Box annotation
| Distance to TSS: | -20 |
|---|---|
| Nearest PromoterID: | NR_121578 |
| Entrez ID: | 101928496 |
| Nearest Unigene: | Hs.410860 |
| Nearest Refseq: | NR_121578 |
| Nearest Ensembl: | ENSG00000225564 |
| Gene Name: | long intergenic non-protein coding RNA 1492 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1492 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.363184 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "83(CTTTATATACAG,+,0.00)" |
