Difference between revisions of "TSS:Hg 101807.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=139 |entrez_id=19 |gc_percent=0.636816 |gene_alias=ABC-1|ABC1|CERP|HDLDT1|TGD |gene_description=ATP binding cassette subfamily...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ABC1= | ||
| + | |CERP= | ||
| + | |HDLDT1= | ||
| + | |TGD= | ||
| + | |all_trans=AF285167:-19 ENST00000423487.6:-27 ENST00000374733.1:-27 uc064uwp.1:-27 uc004bcm.4:-27 BC034824:-27 BC141816:-33 BC142693:-33 AK022254:-41 AK024328:-43 BC146856:46 ENST00000374736.7:-125 uc004bcl.4:-125 AF258627:-125 NM_005502:-134 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=-19 | ||
|distance_to_tss=139 | |distance_to_tss=139 | ||
| + | |end=104928112 | ||
|entrez_id=19 | |entrez_id=19 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
|gene_alias=ABC-1|ABC1|CERP|HDLDT1|TGD | |gene_alias=ABC-1|ABC1|CERP|HDLDT1|TGD | ||
|gene_description=ATP binding cassette subfamily A member 1 | |gene_description=ATP binding cassette subfamily A member 1 | ||
| − | |gene_name=ABCA1 | + | |gene_id=19 |
| + | |gene_name=ATP binding cassette subfamily A member 1 | ||
| + | |gene_source=HGNC:29 | ||
| + | |gene_symbol=ABCA1 | ||
| + | |gene_synonyms=TGD | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29 | ||
|nearest_ensembl=ENSG00000165029 | |nearest_ensembl=ENSG00000165029 | ||
|nearest_promoter_id=NM_005502 | |nearest_promoter_id=NM_005502 | ||
|nearest_refseq=NM_005502 | |nearest_refseq=NM_005502 | ||
|nearest_unigene=Hs.659274 | |nearest_unigene=Hs.659274 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=104928101 | ||
| + | |strand=- | ||
|tata_box="-82(ATCTATAAAAGG,-,0.00)" | |tata_box="-82(ATCTATAAAAGG,-,0.00)" | ||
| + | |transcript_name=AF285167 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101807.1 | |tss_id=hg_101807.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:59, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AF285167 |
|---|---|
| Distance: | -19 |
| Num_trans: | 15 |
| All_trans: | AF285167:-19 ENST00000423487.6:-27 ENST00000374733.1:-27 uc064uwp.1:-27 uc004bcm.4:-27 BC034824:-27 BC141816:-33 BC142693:-33 AK022254:-41 AK024328:-43 BC146856:46 ENST00000374736.7:-125 uc004bcl.4:-125 AF258627:-125 NM_005502:-134 |
TATA-Box annotation
| Distance to TSS: | 139 |
|---|---|
| Nearest PromoterID: | NM_005502 |
| Entrez ID: | 19 |
| Nearest Unigene: | Hs.659274 |
| Nearest Refseq: | NM_005502 |
| Nearest Ensembl: | ENSG00000165029 |
| Gene Name: | ATP binding cassette subfamily A member 1 |
| Gene Alias: | ABC-1 |
| Gene Description: | ATP binding cassette subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-82(ATCTATAAAAGG,-,0.00)" |
