Difference between revisions of "TSS:Hg 101808.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=92 |entrez_id=19 |gc_percent=0.656716 |gene_alias=ABC-1|ABC1|CERP|HDLDT1|TGD |gene_description=ATP binding cassette subfamily A...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ABC1= | ||
| + | |CERP= | ||
| + | |HDLDT1= | ||
| + | |TGD= | ||
| + | |all_trans=AK024328:0 AK022254:0 BC141816:3 BC142693:3 ENST00000423487.6:9 ENST00000374733.1:9 uc064uwp.1:9 uc004bcm.4:9 BC034824:9 AF285167:17 ENST00000374736.7:-76 uc004bcl.4:-76 AF258627:-76 NM_005502:-85 BC146856:92 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=0 | ||
|distance_to_tss=92 | |distance_to_tss=92 | ||
| + | |end=104928161 | ||
|entrez_id=19 | |entrez_id=19 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=ABC-1|ABC1|CERP|HDLDT1|TGD | |gene_alias=ABC-1|ABC1|CERP|HDLDT1|TGD | ||
|gene_description=ATP binding cassette subfamily A member 1 | |gene_description=ATP binding cassette subfamily A member 1 | ||
| − | |gene_name=ABCA1 | + | |gene_id=19 |
| + | |gene_name=ATP binding cassette subfamily A member 1 | ||
| + | |gene_source=HGNC:29 | ||
| + | |gene_symbol=ABCA1 | ||
| + | |gene_synonyms=TGD | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29 | ||
|nearest_ensembl=ENSG00000165029 | |nearest_ensembl=ENSG00000165029 | ||
|nearest_promoter_id=NM_005502 | |nearest_promoter_id=NM_005502 | ||
|nearest_refseq=NM_005502 | |nearest_refseq=NM_005502 | ||
|nearest_unigene=Hs.659274 | |nearest_unigene=Hs.659274 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=104928147 | ||
| + | |strand=- | ||
|tata_box="-35(ATCTATAAAAGG,-,0.00)" | |tata_box="-35(ATCTATAAAAGG,-,0.00)" | ||
| + | |transcript_name=AK024328 AK022254 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101808.1 | |tss_id=hg_101808.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:59, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK024328 AK022254 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | AK024328:0 AK022254:0 BC141816:3 BC142693:3 ENST00000423487.6:9 ENST00000374733.1:9 uc064uwp.1:9 uc004bcm.4:9 BC034824:9 AF285167:17 ENST00000374736.7:-76 uc004bcl.4:-76 AF258627:-76 NM_005502:-85 BC146856:92 |
TATA-Box annotation
| Distance to TSS: | 92 |
|---|---|
| Nearest PromoterID: | NM_005502 |
| Entrez ID: | 19 |
| Nearest Unigene: | Hs.659274 |
| Nearest Refseq: | NM_005502 |
| Nearest Ensembl: | ENSG00000165029 |
| Gene Name: | ATP binding cassette subfamily A member 1 |
| Gene Alias: | ABC-1 |
| Gene Description: | ATP binding cassette subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(ATCTATAAAAGG,-,0.00)" |
