Difference between revisions of "TSS:Hg 101895.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=-3674 |entrez_id=5774 |gc_percent=0.497512 |gene_alias=PTP-H1|PTPH1 |gene_description="protein tyrosine phosphatase, non-recepto...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |PTPH1= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance= | ||
|distance_to_tss=-3674 | |distance_to_tss=-3674 | ||
| + | |end=109421465 | ||
|entrez_id=5774 | |entrez_id=5774 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_002829 | |nearest_refseq=NM_002829 | ||
|nearest_unigene=Hs.436429 | |nearest_unigene=Hs.436429 | ||
| + | |num_trans=0 | ||
| + | |species=human | ||
| + | |start=109421449 | ||
| + | |strand=- | ||
|tata_box="-60(GGCTATTTATAG,-,0.00),-58(CTATTTATAGGT,+,0.00)" | |tata_box="-60(GGCTATTTATAG,-,0.00),-58(CTATTTATAGGT,+,0.00)" | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_101895.1 | |tss_id=hg_101895.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 19:03, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -3674 |
|---|---|
| Nearest PromoterID: | NR_026918 |
| Entrez ID: | 5774 |
| Nearest Unigene: | Hs.436429 |
| Nearest Refseq: | NM_002829 |
| Nearest Ensembl: | ENSG00000070159 |
| Gene Name: | PTPN3 |
| Gene Alias: | PTP-H1 |
| Gene Description: | "protein tyrosine phosphatase, non-receptor type 3" |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-60(GGCTATTTATAG,-,0.00),-58(CTATTTATAGGT,+,0.00)" |
