Difference between revisions of "TSS:Hg 101907.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.19 |distance_to_tss=28 |entrez_id=5774 |gc_percent=0.840796 |gene_alias=PTP-H1|PTPH1 |gene_description="protein tyrosine phosphatase, non-receptor t...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PTPH1= | ||
| + | |all_trans=ENST00000262539.7:0 ENST00000374541.3:0 NM_001145368:0 NM_002829:0 uc010mtu.3:0 uc004bed.3:0 AK316066:0 AK295875:0 AK304434:0 BC063287:0 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.19 | |cpg_percent=0.19 | ||
| + | |distance=0 | ||
|distance_to_tss=28 | |distance_to_tss=28 | ||
| + | |end=109498318 | ||
|entrez_id=5774 | |entrez_id=5774 | ||
|gc_percent=0.840796 | |gc_percent=0.840796 | ||
|gene_alias=PTP-H1|PTPH1 | |gene_alias=PTP-H1|PTPH1 | ||
|gene_description="protein tyrosine phosphatase, non-receptor type 3" | |gene_description="protein tyrosine phosphatase, non-receptor type 3" | ||
| − | |gene_name=PTPN3 | + | |gene_id=5774 |
| + | |gene_name="protein tyrosine phosphatase, non-receptor type 3" | ||
| + | |gene_source=HGNC:9655 | ||
| + | |gene_symbol=PTPN3 | ||
| + | |gene_synonyms=PTPH1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9655 | ||
|nearest_ensembl=ENSG00000070159 | |nearest_ensembl=ENSG00000070159 | ||
|nearest_promoter_id=NM_002829 | |nearest_promoter_id=NM_002829 | ||
|nearest_refseq=NM_002829 | |nearest_refseq=NM_002829 | ||
|nearest_unigene=Hs.436429 | |nearest_unigene=Hs.436429 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=109498251 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000262539.7 ENST00000374541.3 NM_001145368 NM_002829 uc010mtu.3 uc004bed.3 AK316066 AK295875 AK304434 BC063287 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101907.1 | |tss_id=hg_101907.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B7Z3H5 B7Z948 J3KN34 P26045 Q8N4S3 | ||
}} | }} | ||
Revision as of 19:03, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000262539.7 ENST00000374541.3 NM_001145368 NM_002829 uc010mtu.3 uc004bed.3 AK316066 AK295875 AK304434 BC063287 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENST00000262539.7:0 ENST00000374541.3:0 NM_001145368:0 NM_002829:0 uc010mtu.3:0 uc004bed.3:0 AK316066:0 AK295875:0 AK304434:0 BC063287:0 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_002829 |
| Entrez ID: | 5774 |
| Nearest Unigene: | Hs.436429 |
| Nearest Refseq: | NM_002829 |
| Nearest Ensembl: | ENSG00000070159 |
| Gene Name: | "protein tyrosine phosphatase, non-receptor type 3" |
| Gene Alias: | PTP-H1 |
| Gene Description: | "protein tyrosine phosphatase, non-receptor type 3" |
| Gene Type: | protein-coding |
| CpG%: | 0.19 |
| GC%: | 0.840796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
