Difference between revisions of "TSS:Hg 10193.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=138 |entrez_id=6518 |gc_percent=0.472637 |gene_alias=GLUT-5|GLUT5 |gene_description=solute carrier family 2 member 5 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GLUT5= | ||
| + | |all_trans=ENST00000377424.8:-13 uc001apo.4:-13 AK294368:25 AK290398:59 M55531:66 ENST00000377414.7:73 uc001app.5:73 BC035878:73 AK295785:81 BC001692:90 BC001820:90 AK289849:93 NM_003039:-125 NM_001135585:-125 AK300091:132 KJ892149:139 KJ892150:139 CU674838:139 DQ892291:140 DQ895491:140 ENST00000473209.1:-148 uc057caj.1:-148 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=-13 | ||
|distance_to_tss=138 | |distance_to_tss=138 | ||
| + | |end=9069703 | ||
|entrez_id=6518 | |entrez_id=6518 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
|gene_alias=GLUT-5|GLUT5 | |gene_alias=GLUT-5|GLUT5 | ||
|gene_description=solute carrier family 2 member 5 | |gene_description=solute carrier family 2 member 5 | ||
| − | |gene_name=SLC2A5 | + | |gene_id=6518 |
| + | |gene_name=solute carrier family 2 member 5 | ||
| + | |gene_source=HGNC:11010 | ||
| + | |gene_symbol=SLC2A5 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11010 | ||
|nearest_ensembl=ENSG00000142583 | |nearest_ensembl=ENSG00000142583 | ||
|nearest_promoter_id=NM_001328620 | |nearest_promoter_id=NM_001328620 | ||
|nearest_refseq=NM_003039 | |nearest_refseq=NM_003039 | ||
|nearest_unigene=Hs.530003 | |nearest_unigene=Hs.530003 | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=9069676 | ||
| + | |strand=- | ||
|tata_box="-39(TCATTTAAAAGC,-,0.00),23(GGCTATAAAAAT,-,0.00)" | |tata_box="-39(TCATTTAAAAGC,-,0.00),23(GGCTATAAAAAT,-,0.00)" | ||
| + | |transcript_name=ENST00000377424.8 uc001apo.4 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10193.1 | |tss_id=hg_10193.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P22732 | ||
}} | }} | ||
Revision as of 19:04, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000377424.8 uc001apo.4 |
|---|---|
| Distance: | -13 |
| Num_trans: | 22 |
| All_trans: | ENST00000377424.8:-13 uc001apo.4:-13 AK294368:25 AK290398:59 M55531:66 ENST00000377414.7:73 uc001app.5:73 BC035878:73 AK295785:81 BC001692:90 BC001820:90 AK289849:93 NM_003039:-125 NM_001135585:-125 AK300091:132 KJ892149:139 KJ892150:139 CU674838:139 DQ892291:140 DQ895491:140 ENST00000473209.1:-148 uc057caj.1:-148 |
TATA-Box annotation
| Distance to TSS: | 138 |
|---|---|
| Nearest PromoterID: | NM_001328620 |
| Entrez ID: | 6518 |
| Nearest Unigene: | Hs.530003 |
| Nearest Refseq: | NM_003039 |
| Nearest Ensembl: | ENSG00000142583 |
| Gene Name: | solute carrier family 2 member 5 |
| Gene Alias: | GLUT-5 |
| Gene Description: | solute carrier family 2 member 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-39(TCATTTAAAAGC,-,0.00),23(GGCTATAAAAAT,-,0.00)" |
