Difference between revisions of "TSS:Hg 102067.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=114 |entrez_id=9991 |gc_percent=0.706468 |gene_alias=ROD1 |gene_description=polypyrimidine tract binding protein 3 |gene_name=PTB...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000487997.1:1 uc064vcd.1:1 ENST00000343327.6:-25 uc004bfy.4:-25 AK001685:-25 AK302558:-25 CR749471:-33 ENST00000450374.1:-61 uc064vcg.1:-61 BC039896:-67 ENST00000374255.6:-72 uc004bfw.4:-72 ENST00000334318.10:-111 NM_005156:-111 NM_001163790:-111 NM_001163788:-111 NM_001244897:-111 NM_001244896:-111 uc004bfx.4:-111 ENST00000374257.5:-114 uc011lwu.3:-114 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=1 | ||
|distance_to_tss=114 | |distance_to_tss=114 | ||
| + | |end=112333553 | ||
|entrez_id=9991 | |entrez_id=9991 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
|gene_alias=ROD1 | |gene_alias=ROD1 | ||
|gene_description=polypyrimidine tract binding protein 3 | |gene_description=polypyrimidine tract binding protein 3 | ||
| − | |gene_name=PTBP3 | + | |gene_id=9991 |
| + | |gene_name=polypyrimidine tract binding protein 3 | ||
| + | |gene_source=HGNC:10253 | ||
| + | |gene_symbol=PTBP3 | ||
| + | |gene_synonyms=DKFZp781I1117 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10253 | ||
|nearest_ensembl=ENSG00000119314 | |nearest_ensembl=ENSG00000119314 | ||
|nearest_promoter_id=NM_001163790 | |nearest_promoter_id=NM_001163790 | ||
|nearest_refseq=NM_005156 | |nearest_refseq=NM_005156 | ||
|nearest_unigene=Hs.269988 | |nearest_unigene=Hs.269988 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=112333546 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000487997.1 uc064vcd.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102067.1 | |tss_id=hg_102067.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:10, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000487997.1 uc064vcd.1 |
|---|---|
| Distance: | 1 |
| Num_trans: | 21 |
| All_trans: | ENST00000487997.1:1 uc064vcd.1:1 ENST00000343327.6:-25 uc004bfy.4:-25 AK001685:-25 AK302558:-25 CR749471:-33 ENST00000450374.1:-61 uc064vcg.1:-61 BC039896:-67 ENST00000374255.6:-72 uc004bfw.4:-72 ENST00000334318.10:-111 NM_005156:-111 NM_001163790:-111 NM_001163788:-111 NM_001244897:-111 NM_001244896:-111 uc004bfx.4:-111 ENST00000374257.5:-114 uc011lwu.3:-114 |
TATA-Box annotation
| Distance to TSS: | 114 |
|---|---|
| Nearest PromoterID: | NM_001163790 |
| Entrez ID: | 9991 |
| Nearest Unigene: | Hs.269988 |
| Nearest Refseq: | NM_005156 |
| Nearest Ensembl: | ENSG00000119314 |
| Gene Name: | polypyrimidine tract binding protein 3 |
| Gene Alias: | ROD1 |
| Gene Description: | polypyrimidine tract binding protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
