Difference between revisions of "TSS:Hg 102102.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=23 |entrez_id=81932 |gc_percent=0.741294 |gene_alias=2810435D12Rik|C9orf158 |gene_description=haloacid dehalogenase like hydrola...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |C9orf158= | ||
| + | |all_trans=ENST00000374180.3:-3 uc004bhk.4:-3 NM_001304511:-13 NM_001304509:-13 NM_001304510:-13 AK315401:23 ENST00000485934.1:51 uc064vdy.1:51 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=-3 | ||
|distance_to_tss=23 | |distance_to_tss=23 | ||
| + | |end=113376996 | ||
|entrez_id=81932 | |entrez_id=81932 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
|gene_alias=2810435D12Rik|C9orf158 | |gene_alias=2810435D12Rik|C9orf158 | ||
|gene_description=haloacid dehalogenase like hydrolase domain containing 3 | |gene_description=haloacid dehalogenase like hydrolase domain containing 3 | ||
| − | |gene_name=HDHD3 | + | |gene_id=81932 |
| + | |gene_name=haloacid dehalogenase like hydrolase domain containing 3 | ||
| + | |gene_source=HGNC:28171 | ||
| + | |gene_symbol=HDHD3 | ||
| + | |gene_synonyms=MGC12904 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28171 | ||
|nearest_ensembl=ENSG00000119431 | |nearest_ensembl=ENSG00000119431 | ||
|nearest_promoter_id=NM_001304510 | |nearest_promoter_id=NM_001304510 | ||
|nearest_refseq=NM_031219 | |nearest_refseq=NM_031219 | ||
|nearest_unigene=Hs.7739 | |nearest_unigene=Hs.7739 | ||
| + | |num_trans=8 | ||
| + | |species=human | ||
| + | |start=113376975 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000374180.3 uc004bhk.4 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102102.1 | |tss_id=hg_102102.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9BSH5 | ||
}} | }} | ||
Revision as of 19:12, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000374180.3 uc004bhk.4 |
|---|---|
| Distance: | -3 |
| Num_trans: | 8 |
| All_trans: | ENST00000374180.3:-3 uc004bhk.4:-3 NM_001304511:-13 NM_001304509:-13 NM_001304510:-13 AK315401:23 ENST00000485934.1:51 uc064vdy.1:51 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_001304510 |
| Entrez ID: | 81932 |
| Nearest Unigene: | Hs.7739 |
| Nearest Refseq: | NM_031219 |
| Nearest Ensembl: | ENSG00000119431 |
| Gene Name: | haloacid dehalogenase like hydrolase domain containing 3 |
| Gene Alias: | 2810435D12Rik |
| Gene Description: | haloacid dehalogenase like hydrolase domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
