Difference between revisions of "TSS:Hg 102165.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.14 |distance_to_tss=41 |entrez_id=25861 |gc_percent=0.756219 |gene_alias=CIP98|DFNB31|PDZD7B|USH2D|WI |gene_description=whirlin |gene_name=WHRN |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DFNB31= | ||
| + | |PDZD7B= | ||
| + | |USH2D= | ||
| + | |WI= | ||
| + | |all_trans=BC014524:-5 BC142684:-11 ENST00000374057.3:-30 uc004bjb.4:-30 AK056190:-30 NM_001173425:-36 NM_015404:-36 BC142614:-36 BC136416:206 ENST00000362057.3:441 uc004biz.5:441 AB040959:441 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| + | |distance=-5 | ||
|distance_to_tss=41 | |distance_to_tss=41 | ||
| + | |end=114505420 | ||
|entrez_id=25861 | |entrez_id=25861 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
|gene_alias=CIP98|DFNB31|PDZD7B|USH2D|WI | |gene_alias=CIP98|DFNB31|PDZD7B|USH2D|WI | ||
|gene_description=whirlin | |gene_description=whirlin | ||
| − | |gene_name=WHRN | + | |gene_id=25861 |
| + | |gene_name="deafness, autosomal recessive 31" | ||
| + | |gene_source=HGNC:16361 | ||
| + | |gene_symbol=DFNB31 | ||
| + | |gene_synonyms=CIP98 PDZD7B USH2D WHRN | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16361 | ||
|nearest_ensembl=ENSG00000095397 | |nearest_ensembl=ENSG00000095397 | ||
|nearest_promoter_id=NM_001173425 | |nearest_promoter_id=NM_001173425 | ||
|nearest_refseq=NM_015404 | |nearest_refseq=NM_015404 | ||
|nearest_unigene=Hs.93836 | |nearest_unigene=Hs.93836 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=114505410 | ||
| + | |strand=- | ||
| + | |transcript_name=BC014524 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102165.1 | |tss_id=hg_102165.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:14, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC014524 |
|---|---|
| Distance: | -5 |
| Num_trans: | 12 |
| All_trans: | BC014524:-5 BC142684:-11 ENST00000374057.3:-30 uc004bjb.4:-30 AK056190:-30 NM_001173425:-36 NM_015404:-36 BC142614:-36 BC136416:206 ENST00000362057.3:441 uc004biz.5:441 AB040959:441 |
TATA-Box annotation
| Distance to TSS: | 41 |
|---|---|
| Nearest PromoterID: | NM_001173425 |
| Entrez ID: | 25861 |
| Nearest Unigene: | Hs.93836 |
| Nearest Refseq: | NM_015404 |
| Nearest Ensembl: | ENSG00000095397 |
| Gene Name: | "deafness, autosomal recessive 31" |
| Gene Alias: | CIP98 |
| Gene Description: | whirlin |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
