Difference between revisions of "TSS:Hg 102187.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=236 |entrez_id=944 |gc_percent=0.487562 |gene_alias=CD153|CD30L|CD30LG|TNLG3A |gene_description=tumor necrosis factor superfami...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CD30L= | ||
| + | |CD30LG= | ||
| + | |TNLG3A= | ||
| + | |all_trans=BC111939:-16 BC093630:-16 KJ890862:55 AB590754:55 ENST00000223795.2:-56 uc004bji.3:-56 L09753:-56 ENST00000618336.4:-234 NM_001252290:-234 NM_001244:-234 uc022bmi.1:-234 AK313619:-234 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=-16 | ||
|distance_to_tss=236 | |distance_to_tss=236 | ||
| + | |end=114930361 | ||
|entrez_id=944 | |entrez_id=944 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
|gene_alias=CD153|CD30L|CD30LG|TNLG3A | |gene_alias=CD153|CD30L|CD30LG|TNLG3A | ||
|gene_description=tumor necrosis factor superfamily member 8 | |gene_description=tumor necrosis factor superfamily member 8 | ||
| − | |gene_name=TNFSF8 | + | |gene_id=944 |
| + | |gene_name=tumor necrosis factor superfamily member 8 | ||
| + | |gene_source=HGNC:11938 | ||
| + | |gene_symbol=TNFSF8 | ||
| + | |gene_synonyms=CD153 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11938 | ||
|nearest_ensembl=ENSG00000106952 | |nearest_ensembl=ENSG00000106952 | ||
|nearest_promoter_id=NM_001244 | |nearest_promoter_id=NM_001244 | ||
|nearest_refseq=NM_001244 | |nearest_refseq=NM_001244 | ||
|nearest_unigene=Hs.494901 | |nearest_unigene=Hs.494901 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=114930357 | ||
| + | |strand=- | ||
|tata_box="43(GACTATATAAAG,-,0.00)" | |tata_box="43(GACTATATAAAG,-,0.00)" | ||
| + | |transcript_name=BC111939 BC093630 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102187.1 | |tss_id=hg_102187.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:15, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC111939 BC093630 |
|---|---|
| Distance: | -16 |
| Num_trans: | 12 |
| All_trans: | BC111939:-16 BC093630:-16 KJ890862:55 AB590754:55 ENST00000223795.2:-56 uc004bji.3:-56 L09753:-56 ENST00000618336.4:-234 NM_001252290:-234 NM_001244:-234 uc022bmi.1:-234 AK313619:-234 |
TATA-Box annotation
| Distance to TSS: | 236 |
|---|---|
| Nearest PromoterID: | NM_001244 |
| Entrez ID: | 944 |
| Nearest Unigene: | Hs.494901 |
| Nearest Refseq: | NM_001244 |
| Nearest Ensembl: | ENSG00000106952 |
| Gene Name: | tumor necrosis factor superfamily member 8 |
| Gene Alias: | CD153 |
| Gene Description: | tumor necrosis factor superfamily member 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "43(GACTATATAAAG,-,0.00)" |
