Difference between revisions of "TSS:Hg 102237.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=-14 |entrez_id=101928775 |gc_percent=0.527363 |gene_alias=- |gene_description=uncharacterized LOC101928775 |gene_name=LOC101928...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000433546.2:2 NR_109805:2 uc033dgb.2:2 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=2 | ||
|distance_to_tss=-14 | |distance_to_tss=-14 | ||
| + | |end=115744266 | ||
|entrez_id=101928775 | |entrez_id=101928775 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC101928775 | |gene_description=uncharacterized LOC101928775 | ||
| − | |gene_name=LOC101928775 | + | |gene_id=101928775 |
| + | |gene_name=uncharacterized LOC101928775 | ||
| + | |gene_source=EntrezGene:101928775 | ||
| + | |gene_symbol=LOC101928775 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id= | ||
|nearest_ensembl=ENSG00000228714 | |nearest_ensembl=ENSG00000228714 | ||
|nearest_promoter_id=NR_109805 | |nearest_promoter_id=NR_109805 | ||
|nearest_refseq=NR_109805 | |nearest_refseq=NR_109805 | ||
|nearest_unigene=Hs.522362 | |nearest_unigene=Hs.522362 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=115744240 | ||
| + | |strand=- | ||
|tata_box="-86(GCGTATTAAGAG,-,0.00)" | |tata_box="-86(GCGTATTAAGAG,-,0.00)" | ||
| + | |transcript_name=ENST00000433546.2 NR_109805 uc033dgb.2 | ||
| + | |tss_classification=no | ||
|tss_id=hg_102237.1 | |tss_id=hg_102237.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:17, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000433546.2 NR_109805 uc033dgb.2 |
|---|---|
| Distance: | 2 |
| Num_trans: | 3 |
| All_trans: | ENST00000433546.2:2 NR_109805:2 uc033dgb.2:2 |
TATA-Box annotation
| Distance to TSS: | -14 |
|---|---|
| Nearest PromoterID: | NR_109805 |
| Entrez ID: | 101928775 |
| Nearest Unigene: | Hs.522362 |
| Nearest Refseq: | NR_109805 |
| Nearest Ensembl: | ENSG00000228714 |
| Gene Name: | uncharacterized LOC101928775 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC101928775 |
| Gene Type: | ncRNA |
| CpG%: | 0.045 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-86(GCGTATTAAGAG,-,0.00)" |
