Difference between revisions of "TSS:Hg 102294.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.085 |distance_to_tss=141 |entrez_id=55755 |gc_percent=0.661692 |gene_alias=C48|Cep215|MCPH3 |gene_description=CDK5 regulatory subunit associated pro...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Cep215= | ||
| + | |MCPH3= | ||
| + | |all_trans=ENST00000473282.6:16 ENST00000480112.5:16 uc064vij.1:16 uc064vik.1:16 BC136275:16 BC143732:16 BC143734:16 BC143755:16 BC143760:16 BC143762:16 BC143753:16 BC143764:16 ENST00000481266.1:-24 uc064viv.1:-24 AB489151:40 DQ581824:44 AF448860:-83 BC146782:-102 AB046853:-102 BC019577:-103 BX537421:-117 ENST00000349780.8:-121 ENST00000360190.8:-121 uc004bkf.5:-121 uc004bkg.5:-121 AL833481:-121 BX537759:-121 AK122913:-122 BX537708:-122 ENST00000360822.7:-133 ENST00000491334.1:-133 NM_001272039:-133 NM_001011649:-133 NR_073554:-133 NR_073557:-133 NM_018249:-133 NR_073558:-133 NR_073555:-133 NR_073556:-133 uc004bkh.2:-133 uc064viw.1:-133 KP294527:-133 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| + | |distance=16 | ||
|distance_to_tss=141 | |distance_to_tss=141 | ||
| + | |end=120580037 | ||
|entrez_id=55755 | |entrez_id=55755 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
|gene_alias=C48|Cep215|MCPH3 | |gene_alias=C48|Cep215|MCPH3 | ||
|gene_description=CDK5 regulatory subunit associated protein 2 | |gene_description=CDK5 regulatory subunit associated protein 2 | ||
| − | |gene_name=CDK5RAP2 | + | |gene_id=55755 |
| + | |gene_name=CDK5 regulatory subunit associated protein 2 | ||
| + | |gene_source=HGNC:18672 | ||
| + | |gene_symbol=CDK5RAP2 | ||
| + | |gene_synonyms=C48 CEP215 FLJ10867 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18672 | ||
|nearest_ensembl=ENSG00000136861 | |nearest_ensembl=ENSG00000136861 | ||
|nearest_promoter_id=NR_073558 | |nearest_promoter_id=NR_073558 | ||
|nearest_refseq=NM_018249 | |nearest_refseq=NM_018249 | ||
|nearest_unigene=Hs.269560 | |nearest_unigene=Hs.269560 | ||
| + | |num_trans=42 | ||
| + | |species=human | ||
| + | |start=120580020 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000473282.6 ENST00000480112.5 uc064vij.1 uc064vik.1 BC136275 BC143732 BC143734 BC143755 BC143760 BC143762 BC143753 BC143764 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102294.1 | |tss_id=hg_102294.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B7ZLE9 B9EG74 F8WCI3 F8WF55 | ||
}} | }} | ||
Revision as of 19:20, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000473282.6 ENST00000480112.5 uc064vij.1 uc064vik.1 BC136275 BC143732 BC143734 BC143755 BC143760 BC143762 BC143753 BC143764 |
|---|---|
| Distance: | 16 |
| Num_trans: | 42 |
| All_trans: | ENST00000473282.6:16 ENST00000480112.5:16 uc064vij.1:16 uc064vik.1:16 BC136275:16 BC143732:16 BC143734:16 BC143755:16 BC143760:16 BC143762:16 BC143753:16 BC143764:16 ENST00000481266.1:-24 uc064viv.1:-24 AB489151:40 DQ581824:44 AF448860:-83 BC146782:-102 AB046853:-102 BC019577:-103 BX537421:-117 ENST00000349780.8:-121 ENST00000360190.8:-121 uc004bkf.5:-121 uc004bkg.5:-121 AL833481:-121 BX537759:-121 AK122913:-122 BX537708:-122 ENST00000360822.7:-133 ENST00000491334.1:-133 NM_001272039:-133 NM_001011649:-133 NR_073554:-133 NR_073557:-133 NM_018249:-133 NR_073558:-133 NR_073555:-133 NR_073556:-133 uc004bkh.2:-133 uc064viw.1:-133 KP294527:-133 |
TATA-Box annotation
| Distance to TSS: | 141 |
|---|---|
| Nearest PromoterID: | NR_073558 |
| Entrez ID: | 55755 |
| Nearest Unigene: | Hs.269560 |
| Nearest Refseq: | NM_018249 |
| Nearest Ensembl: | ENSG00000136861 |
| Gene Name: | CDK5 regulatory subunit associated protein 2 |
| Gene Alias: | C48 |
| Gene Description: | CDK5 regulatory subunit associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
