Difference between revisions of "TSS:Hg 102359.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=316 |entrez_id=2681 |gc_percent=0.800995 |gene_alias=GGTA|GGTA1|GLYT2|a1/3GTP |gene_description="glycoprotein, alpha-galactosylt...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GGTA1= | ||
| + | |GLYT2= | ||
| + | |a1/3GTP= | ||
| + | |all_trans=ENST00000481534.5:-42 ENST00000495328.5:-42 AF378121:-42 AF378123:-42 AF378122:-42 ENST00000373793.3:-101 BC045756:-150 ENST00000481799.5:-312 NR_003191:-312 NR_045211:-312 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=-42 | ||
|distance_to_tss=316 | |distance_to_tss=316 | ||
| + | |end=121499715 | ||
|entrez_id=2681 | |entrez_id=2681 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
|gene_alias=GGTA|GGTA1|GLYT2|a1/3GTP | |gene_alias=GGTA|GGTA1|GLYT2|a1/3GTP | ||
|gene_description="glycoprotein, alpha-galactosyltransferase 1 pseudogene" | |gene_description="glycoprotein, alpha-galactosyltransferase 1 pseudogene" | ||
| − | |gene_name=GGTA1P | + | |gene_id=2681 |
| + | |gene_name="glycoprotein, alpha-galactosyltransferase 1 pseudogene; glycoprotein, alpha-galactosyltransferase 2, pseudogene" | ||
| + | |gene_source=HGNC:4253 HGNC:4254 | ||
| + | |gene_symbol=GGTA1P GGTA2P | ||
| + | |gene_synonyms=HGT2 | ||
|gene_type=pseudo | |gene_type=pseudo | ||
| + | |hgnc_mgi_id=HGNC:4253 HGNC:4254 | ||
|nearest_ensembl=ENSG00000204136 | |nearest_ensembl=ENSG00000204136 | ||
|nearest_promoter_id=NR_045211 | |nearest_promoter_id=NR_045211 | ||
|nearest_refseq=NR_003191 | |nearest_refseq=NR_003191 | ||
|nearest_unigene=Hs.97469 | |nearest_unigene=Hs.97469 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=121499706 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000481534.5 ENST00000495328.5 AF378121 AF378123 AF378122 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102359.1 | |tss_id=hg_102359.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:23, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000481534.5 ENST00000495328.5 AF378121 AF378123 AF378122 |
|---|---|
| Distance: | -42 |
| Num_trans: | 10 |
| All_trans: | ENST00000481534.5:-42 ENST00000495328.5:-42 AF378121:-42 AF378123:-42 AF378122:-42 ENST00000373793.3:-101 BC045756:-150 ENST00000481799.5:-312 NR_003191:-312 NR_045211:-312 |
TATA-Box annotation
| Distance to TSS: | 316 |
|---|---|
| Nearest PromoterID: | NR_045211 |
| Entrez ID: | 2681 |
| Nearest Unigene: | Hs.97469 |
| Nearest Refseq: | NR_003191 |
| Nearest Ensembl: | ENSG00000204136 |
| Gene Name: | "glycoprotein, alpha-galactosyltransferase 1 pseudogene; glycoprotein, alpha-galactosyltransferase 2, pseudogene" |
| Gene Alias: | GGTA |
| Gene Description: | "glycoprotein, alpha-galactosyltransferase 1 pseudogene" |
| Gene Type: | pseudo |
| CpG%: | 0.15 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
