Difference between revisions of "TSS:Hg 102383.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=8071 |entrez_id=26468 |gc_percent=0.691542 |gene_alias=LHX6.1 |gene_description=LIM homeobox 6 |gene_name=LHX6 |gene_type=protei...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000482062.1:-217 uc064vme.1:-217 ENST00000464484.3:-246 uc064vmf.1:-246 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=-217 | ||
|distance_to_tss=8071 | |distance_to_tss=8071 | ||
| + | |end=122213676 | ||
|entrez_id=26468 | |entrez_id=26468 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
|gene_alias=LHX6.1 | |gene_alias=LHX6.1 | ||
|gene_description=LIM homeobox 6 | |gene_description=LIM homeobox 6 | ||
| − | |gene_name=LHX6 | + | |gene_id=26468 |
| + | |gene_name=LIM homeobox 6 | ||
| + | |gene_source=HGNC:21735 | ||
| + | |gene_symbol=LHX6 | ||
| + | |gene_synonyms=LHX6.1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:21735 | ||
|nearest_ensembl=ENSG00000106852 | |nearest_ensembl=ENSG00000106852 | ||
|nearest_promoter_id=NM_001242335 | |nearest_promoter_id=NM_001242335 | ||
|nearest_refseq=NM_014368 | |nearest_refseq=NM_014368 | ||
|nearest_unigene=Hs.103137 | |nearest_unigene=Hs.103137 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=122213661 | ||
| + | |strand=- | ||
|tata_box="-87(CGTCATAAAAAG,-,0.00)" | |tata_box="-87(CGTCATAAAAAG,-,0.00)" | ||
| + | |transcript_name=ENST00000482062.1 uc064vme.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102383.1 | |tss_id=hg_102383.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=H0YMY8 | ||
}} | }} | ||
Revision as of 19:24, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000482062.1 uc064vme.1 |
|---|---|
| Distance: | -217 |
| Num_trans: | 4 |
| All_trans: | ENST00000482062.1:-217 uc064vme.1:-217 ENST00000464484.3:-246 uc064vmf.1:-246 |
TATA-Box annotation
| Distance to TSS: | 8071 |
|---|---|
| Nearest PromoterID: | NM_001242335 |
| Entrez ID: | 26468 |
| Nearest Unigene: | Hs.103137 |
| Nearest Refseq: | NM_014368 |
| Nearest Ensembl: | ENSG00000106852 |
| Gene Name: | LIM homeobox 6 |
| Gene Alias: | LHX6.1 |
| Gene Description: | LIM homeobox 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-87(CGTCATAAAAAG,-,0.00)" |
