Difference between revisions of "TSS:Hg 102411.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.165 |distance_to_tss=-7 |entrez_id=55342 |gc_percent=0.79602 |gene_alias=HEL162|ILF3L|SPNR|p74 |gene_description=spermatid perinuclear RNA binding p...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ILF3L= | ||
| + | |SPNR= | ||
| + | |all_trans=ENST00000348403.9:0 ENST00000360998.3:0 ENST00000407982.6:0 NR_033234:0 NM_001171137:0 NM_018387:0 uc004bns.4:0 uc004bnu.4:0 uc064vom.1:0 BC017732:0 AL136866:0 EU794683:0 AL833947:0 AL834150:0 AK027890:0 BC108731:0 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| + | |distance=0 | ||
|distance_to_tss=-7 | |distance_to_tss=-7 | ||
| + | |end=123268627 | ||
|entrez_id=55342 | |entrez_id=55342 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
|gene_alias=HEL162|ILF3L|SPNR|p74 | |gene_alias=HEL162|ILF3L|SPNR|p74 | ||
|gene_description=spermatid perinuclear RNA binding protein | |gene_description=spermatid perinuclear RNA binding protein | ||
| − | |gene_name=STRBP | + | |gene_id=55342 |
| + | |gene_name=spermatid perinuclear RNA binding protein | ||
| + | |gene_source=HGNC:16462 | ||
| + | |gene_symbol=STRBP | ||
| + | |gene_synonyms=FLJ11307 SPNR | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16462 | ||
|nearest_ensembl=ENSG00000165209 | |nearest_ensembl=ENSG00000165209 | ||
|nearest_promoter_id=NM_001171137 | |nearest_promoter_id=NM_001171137 | ||
|nearest_refseq=NM_018387 | |nearest_refseq=NM_018387 | ||
|nearest_unigene=Hs.287659 | |nearest_unigene=Hs.287659 | ||
| + | |num_trans=16 | ||
| + | |p74= | ||
| + | |species=human | ||
| + | |start=123268538 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000348403.9 ENST00000360998.3 ENST00000407982.6 NR_033234 NM_001171137 NM_018387 uc004bns.4 uc004bnu.4 uc064vom.1 BC017732 AL136866 EU794683 AL833947 AL834150 AK027890 BC108731 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102411.1 | |tss_id=hg_102411.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5JPA5 Q96SI9 V9HWK4 | ||
}} | }} | ||
Revision as of 19:25, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000348403.9 ENST00000360998.3 ENST00000407982.6 NR_033234 NM_001171137 NM_018387 uc004bns.4 uc004bnu.4 uc064vom.1 BC017732 AL136866 EU794683 AL833947 AL834150 AK027890 BC108731 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000348403.9:0 ENST00000360998.3:0 ENST00000407982.6:0 NR_033234:0 NM_001171137:0 NM_018387:0 uc004bns.4:0 uc004bnu.4:0 uc064vom.1:0 BC017732:0 AL136866:0 EU794683:0 AL833947:0 AL834150:0 AK027890:0 BC108731:0 |
TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_001171137 |
| Entrez ID: | 55342 |
| Nearest Unigene: | Hs.287659 |
| Nearest Refseq: | NM_018387 |
| Nearest Ensembl: | ENSG00000165209 |
| Gene Name: | spermatid perinuclear RNA binding protein |
| Gene Alias: | HEL162 |
| Gene Description: | spermatid perinuclear RNA binding protein |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
