Difference between revisions of "TSS:Hg 102447.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=43 |entrez_id=2649 |gc_percent=0.791045 |gene_alias=CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR |gene_description=nuclear receptor subf...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GCNF= | ||
| + | |GCNF1= | ||
| + | |NR61= | ||
| + | |RTR= | ||
| + | |all_trans=ENST00000487099.6:0 ENST00000344523.8:0 uc004bor.3:0 uc064vqe.1:0 X99975:0 U80802:0 ENST00000373584.7:-3 uc010mwq.3:-3 AF004291:-3 S83309:-3 ENST00000416460.6:-16 NM_033334:-16 NM_001489:-16 NM_001278546:-16 uc004boq.3:-16 BC030600:-16 BC042395:-16 BC042406:-16 U64876:47 HQ692858:122 HQ709185:122 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=0 | ||
|distance_to_tss=43 | |distance_to_tss=43 | ||
| + | |end=124771294 | ||
|entrez_id=2649 | |entrez_id=2649 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
|gene_alias=CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR | |gene_alias=CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR | ||
|gene_description=nuclear receptor subfamily 6 group A member 1 | |gene_description=nuclear receptor subfamily 6 group A member 1 | ||
| − | |gene_name=NR6A1 | + | |gene_id=2649 |
| + | |gene_name=nuclear receptor subfamily 6 group A member 1 | ||
| + | |gene_source=HGNC:7985 | ||
| + | |gene_symbol=NR6A1 | ||
| + | |gene_synonyms=CT150 GCNF1 RTR | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hGCNF= | ||
| + | |hRTR= | ||
| + | |hgnc_mgi_id=HGNC:7985 | ||
|nearest_ensembl=ENSG00000148200 | |nearest_ensembl=ENSG00000148200 | ||
|nearest_promoter_id=NM_001489 | |nearest_promoter_id=NM_001489 | ||
|nearest_refseq=NM_001489 | |nearest_refseq=NM_001489 | ||
|nearest_unigene=Hs.20131 | |nearest_unigene=Hs.20131 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=124771240 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000487099.6 ENST00000344523.8 uc004bor.3 uc064vqe.1 X99975 U80802 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102447.1 | |tss_id=hg_102447.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F1D8S0 Q15406 | ||
}} | }} | ||
Revision as of 19:26, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000487099.6 ENST00000344523.8 uc004bor.3 uc064vqe.1 X99975 U80802 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000487099.6:0 ENST00000344523.8:0 uc004bor.3:0 uc064vqe.1:0 X99975:0 U80802:0 ENST00000373584.7:-3 uc010mwq.3:-3 AF004291:-3 S83309:-3 ENST00000416460.6:-16 NM_033334:-16 NM_001489:-16 NM_001278546:-16 uc004boq.3:-16 BC030600:-16 BC042395:-16 BC042406:-16 U64876:47 HQ692858:122 HQ709185:122 |
TATA-Box annotation
| Distance to TSS: | 43 |
|---|---|
| Nearest PromoterID: | NM_001489 |
| Entrez ID: | 2649 |
| Nearest Unigene: | Hs.20131 |
| Nearest Refseq: | NM_001489 |
| Nearest Ensembl: | ENSG00000148200 |
| Gene Name: | nuclear receptor subfamily 6 group A member 1 |
| Gene Alias: | CT150 |
| Gene Description: | nuclear receptor subfamily 6 group A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
