Difference between revisions of "TSS:Hg 102448.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=-10 |entrez_id=2649 |gc_percent=0.78607 |gene_alias=CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR |gene_description=nuclear receptor subf...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GCNF= | ||
| + | |GCNF1= | ||
| + | |NR61= | ||
| + | |RTR= | ||
| + | |all_trans=ENST00000416460.6:0 NM_033334:0 NM_001489:0 NM_001278546:0 uc004boq.3:0 BC030600:0 BC042395:0 BC042406:0 ENST00000373584.7:7 uc010mwq.3:7 AF004291:7 S83309:7 ENST00000344523.8:17 uc064vqe.1:17 ENST00000487099.6:27 uc004bor.3:27 X99975:27 U80802:28 U64876:110 HQ692858:185 HQ709185:185 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=0 | ||
|distance_to_tss=-10 | |distance_to_tss=-10 | ||
| + | |end=124771336 | ||
|entrez_id=2649 | |entrez_id=2649 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
|gene_alias=CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR | |gene_alias=CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR | ||
|gene_description=nuclear receptor subfamily 6 group A member 1 | |gene_description=nuclear receptor subfamily 6 group A member 1 | ||
| − | |gene_name=NR6A1 | + | |gene_id=2649 |
| + | |gene_name=nuclear receptor subfamily 6 group A member 1 | ||
| + | |gene_source=HGNC:7985 | ||
| + | |gene_symbol=NR6A1 | ||
| + | |gene_synonyms=CT150 GCNF1 RTR | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hGCNF= | ||
| + | |hRTR= | ||
| + | |hgnc_mgi_id=HGNC:7985 | ||
|nearest_ensembl=ENSG00000148200 | |nearest_ensembl=ENSG00000148200 | ||
|nearest_promoter_id=NM_033334 | |nearest_promoter_id=NM_033334 | ||
|nearest_refseq=NM_001489 | |nearest_refseq=NM_001489 | ||
|nearest_unigene=Hs.20131 | |nearest_unigene=Hs.20131 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=124771303 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000416460.6 NM_033334 NM_001489 NM_001278546 uc004boq.3 BC030600 BC042395 BC042406 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102448.1 | |tss_id=hg_102448.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q15406 | ||
}} | }} | ||
Revision as of 19:26, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000416460.6 NM_033334 NM_001489 NM_001278546 uc004boq.3 BC030600 BC042395 BC042406 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000416460.6:0 NM_033334:0 NM_001489:0 NM_001278546:0 uc004boq.3:0 BC030600:0 BC042395:0 BC042406:0 ENST00000373584.7:7 uc010mwq.3:7 AF004291:7 S83309:7 ENST00000344523.8:17 uc064vqe.1:17 ENST00000487099.6:27 uc004bor.3:27 X99975:27 U80802:28 U64876:110 HQ692858:185 HQ709185:185 |
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_033334 |
| Entrez ID: | 2649 |
| Nearest Unigene: | Hs.20131 |
| Nearest Refseq: | NM_001489 |
| Nearest Ensembl: | ENSG00000148200 |
| Gene Name: | nuclear receptor subfamily 6 group A member 1 |
| Gene Alias: | CT150 |
| Gene Description: | nuclear receptor subfamily 6 group A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
