Difference between revisions of "TSS:Hg 102471.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.155 |distance_to_tss=110 |entrez_id=5537 |gc_percent=0.731343 |gene_alias=PP6|PP6C |gene_description=protein phosphatase 6 catalytic subunit |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PP6C= | ||
| + | |all_trans=ENST00000373547.8:6 uc004bpg.5:6 AK299087:21 AK295190:21 AK316527:32 BC006990:38 ENST00000456642.1:41 uc064vrc.1:41 AK312332:53 AK295752:65 X92972:85 ENST00000451402.5:-105 ENST00000415905.5:-105 NM_001123355:-105 NM_001123369:-105 NM_002721:-105 uc010mww.4:-105 uc010mwv.4:-105 AF035158:106 KJ891876:106 BT019708:106 AB385530:106 KU178271:106 KU178272:106 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| + | |distance=6 | ||
|distance_to_tss=110 | |distance_to_tss=110 | ||
| + | |end=125189834 | ||
|entrez_id=5537 | |entrez_id=5537 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
|gene_alias=PP6|PP6C | |gene_alias=PP6|PP6C | ||
|gene_description=protein phosphatase 6 catalytic subunit | |gene_description=protein phosphatase 6 catalytic subunit | ||
| − | |gene_name=PPP6C | + | |gene_id=5537 |
| + | |gene_name=protein phosphatase 6 catalytic subunit | ||
| + | |gene_source=HGNC:9323 | ||
| + | |gene_symbol=PPP6C | ||
| + | |gene_synonyms=PP6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9323 | ||
|nearest_ensembl=ENSG00000119414 | |nearest_ensembl=ENSG00000119414 | ||
|nearest_promoter_id=NM_002721 | |nearest_promoter_id=NM_002721 | ||
|nearest_refseq=NM_002721 | |nearest_refseq=NM_002721 | ||
|nearest_unigene=Hs.744091 | |nearest_unigene=Hs.744091 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=125189823 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000373547.8 uc004bpg.5 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102471.1 | |tss_id=hg_102471.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R861 O00743 | ||
}} | }} | ||
Revision as of 19:27, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000373547.8 uc004bpg.5 |
|---|---|
| Distance: | 6 |
| Num_trans: | 24 |
| All_trans: | ENST00000373547.8:6 uc004bpg.5:6 AK299087:21 AK295190:21 AK316527:32 BC006990:38 ENST00000456642.1:41 uc064vrc.1:41 AK312332:53 AK295752:65 X92972:85 ENST00000451402.5:-105 ENST00000415905.5:-105 NM_001123355:-105 NM_001123369:-105 NM_002721:-105 uc010mww.4:-105 uc010mwv.4:-105 AF035158:106 KJ891876:106 BT019708:106 AB385530:106 KU178271:106 KU178272:106 |
TATA-Box annotation
| Distance to TSS: | 110 |
|---|---|
| Nearest PromoterID: | NM_002721 |
| Entrez ID: | 5537 |
| Nearest Unigene: | Hs.744091 |
| Nearest Refseq: | NM_002721 |
| Nearest Ensembl: | ENSG00000119414 |
| Gene Name: | protein phosphatase 6 catalytic subunit |
| Gene Alias: | PP6 |
| Gene Description: | protein phosphatase 6 catalytic subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
