Difference between revisions of "TSS:Hg 102767.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.075 |distance_to_tss=-80 |entrez_id=1861 |gc_percent=0.59204 |gene_alias=DQ2|DYT1 |gene_description=torsin family 1 member A |gene_name=TOR1A |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DYT1= | ||
| + | |all_trans=AK294677:-3 NM_000113:75 ENST00000351698.4:103 uc004byl.4:103 AK056062:103 AF007871:110 BC000674:114 AK075343:125 AK314505:132 ENST00000473084.1:133 uc064wma.1:133 BC014484:133 KJ896739:149 KR709744:149 KR709745:149 KJ901397:149 DQ892657:150 DQ895897:150 AB590352:151 BT006931:152 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| + | |distance=-3 | ||
|distance_to_tss=-80 | |distance_to_tss=-80 | ||
| + | |end=129824247 | ||
|entrez_id=1861 | |entrez_id=1861 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
|gene_alias=DQ2|DYT1 | |gene_alias=DQ2|DYT1 | ||
|gene_description=torsin family 1 member A | |gene_description=torsin family 1 member A | ||
| − | |gene_name=TOR1A | + | |gene_id=1861 |
| + | |gene_name=torsin family 1 member A | ||
| + | |gene_source=HGNC:3098 | ||
| + | |gene_symbol=TOR1A | ||
| + | |gene_synonyms=DQ2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3098 | ||
|nearest_ensembl=ENSG00000136827 | |nearest_ensembl=ENSG00000136827 | ||
|nearest_promoter_id=NM_000113 | |nearest_promoter_id=NM_000113 | ||
|nearest_refseq=NM_000113 | |nearest_refseq=NM_000113 | ||
|nearest_unigene=Hs.534312 | |nearest_unigene=Hs.534312 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=129824236 | ||
| + | |strand=- | ||
| + | |transcript_name=AK294677 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102767.1 | |tss_id=hg_102767.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:40, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK294677 |
|---|---|
| Distance: | -3 |
| Num_trans: | 20 |
| All_trans: | AK294677:-3 NM_000113:75 ENST00000351698.4:103 uc004byl.4:103 AK056062:103 AF007871:110 BC000674:114 AK075343:125 AK314505:132 ENST00000473084.1:133 uc064wma.1:133 BC014484:133 KJ896739:149 KR709744:149 KR709745:149 KJ901397:149 DQ892657:150 DQ895897:150 AB590352:151 BT006931:152 |
TATA-Box annotation
| Distance to TSS: | -80 |
|---|---|
| Nearest PromoterID: | NM_000113 |
| Entrez ID: | 1861 |
| Nearest Unigene: | Hs.534312 |
| Nearest Refseq: | NM_000113 |
| Nearest Ensembl: | ENSG00000136827 |
| Gene Name: | torsin family 1 member A |
| Gene Alias: | DQ2 |
| Gene Description: | torsin family 1 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
