Difference between revisions of "TSS:Hg 102969.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.075 |distance_to_tss=-10 |entrez_id=26301 |gc_percent=0.706468 |gene_alias=A3GALNT|FS|UNQ2513 |gene_description="globoside alpha-1,3-N-acetylgalacto...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |FS= | ||
| + | |UNQ2513= | ||
| + | |all_trans=ENST00000540636.5:0 ENST00000372040.7:0 NM_001282632:0 NM_001282629:0 NM_001288573:0 NM_001288572:0 NM_021996:0 uc011mcx.3:0 uc004ccw.5:0 ENST00000372043.7:9 ENST00000470431.5:9 ENST00000472281.5:9 uc033djx.2:9 uc064wtr.1:9 uc064wts.1:9 AK293997:14 AK074944:14 AK291498:14 AK303825:14 AK307687:14 AK314097:14 AK074639:16 AF163572:17 ENST00000487864.1:27 uc064wtv.1:27 ENST00000372038.7:31 uc064wtt.1:31 BC032499:31 ENST00000372036.3:33 uc064wtu.1:33 AY358175:34 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| + | |distance=0 | ||
|distance_to_tss=-10 | |distance_to_tss=-10 | ||
| + | |end=133163982 | ||
|entrez_id=26301 | |entrez_id=26301 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
|gene_alias=A3GALNT|FS|UNQ2513 | |gene_alias=A3GALNT|FS|UNQ2513 | ||
|gene_description="globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" | |gene_description="globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" | ||
| − | |gene_name=GBGT1 | + | |gene_id=26301 |
| + | |gene_name="globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" | ||
| + | |gene_source=HGNC:20460 | ||
| + | |gene_symbol=GBGT1 | ||
| + | |gene_synonyms=A3GALNT FS MGC44848 UDP-GalNAc | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:20460 | ||
|nearest_ensembl=ENSG00000148288 | |nearest_ensembl=ENSG00000148288 | ||
|nearest_promoter_id=NM_001288573 | |nearest_promoter_id=NM_001288573 | ||
|nearest_refseq=NM_021996 | |nearest_refseq=NM_021996 | ||
|nearest_unigene=Hs.495419 | |nearest_unigene=Hs.495419 | ||
| + | |num_trans=31 | ||
| + | |species=human | ||
| + | |start=133163927 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000540636.5 ENST00000372040.7 NM_001282632 NM_001282629 NM_001288573 NM_001288572 NM_021996 uc011mcx.3 uc004ccw.5 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102969.1 | |tss_id=hg_102969.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=J7Q0Z1 Q8N5D6 | ||
}} | }} | ||
Revision as of 19:49, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000540636.5 ENST00000372040.7 NM_001282632 NM_001282629 NM_001288573 NM_001288572 NM_021996 uc011mcx.3 uc004ccw.5 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | ENST00000540636.5:0 ENST00000372040.7:0 NM_001282632:0 NM_001282629:0 NM_001288573:0 NM_001288572:0 NM_021996:0 uc011mcx.3:0 uc004ccw.5:0 ENST00000372043.7:9 ENST00000470431.5:9 ENST00000472281.5:9 uc033djx.2:9 uc064wtr.1:9 uc064wts.1:9 AK293997:14 AK074944:14 AK291498:14 AK303825:14 AK307687:14 AK314097:14 AK074639:16 AF163572:17 ENST00000487864.1:27 uc064wtv.1:27 ENST00000372038.7:31 uc064wtt.1:31 BC032499:31 ENST00000372036.3:33 uc064wtu.1:33 AY358175:34 |
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_001288573 |
| Entrez ID: | 26301 |
| Nearest Unigene: | Hs.495419 |
| Nearest Refseq: | NM_021996 |
| Nearest Ensembl: | ENSG00000148288 |
| Gene Name: | "globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" |
| Gene Alias: | A3GALNT |
| Gene Description: | "globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
