Difference between revisions of "TSS:Hg 10298.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.165 |distance_to_tss=20 |entrez_id=93611 |gc_percent=0.771144 |gene_alias=FBG3|FBX30|FBX6A|Fbx44|Fbxo6a |gene_description=F-box protein 44 |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |FBX30= | ||
| + | |FBX6A= | ||
| + | |Fbx44= | ||
| + | |Fbxo6a= | ||
| + | |all_trans=BC025233:-15 BC096747:-31 AK313019:-31 AK308531:46 DQ892848:48 DQ892849:48 DQ896095:48 BC014957:-49 CR542110:50 KJ898609:50 CU692940:50 AB463629:50 ENST00000466919.1:193 uc057cgi.1:193 ENST00000354287.4:-282 uc001asj.4:-282 AF187318:-282 NM_012168:-431 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| + | |distance=-15 | ||
|distance_to_tss=20 | |distance_to_tss=20 | ||
| + | |end=11654400 | ||
|entrez_id=93611 | |entrez_id=93611 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
|gene_alias=FBG3|FBX30|FBX6A|Fbx44|Fbxo6a | |gene_alias=FBG3|FBX30|FBX6A|Fbx44|Fbxo6a | ||
|gene_description=F-box protein 44 | |gene_description=F-box protein 44 | ||
| − | |gene_name= | + | |gene_id=26232 |
| + | |gene_name=F-box protein 2 | ||
| + | |gene_source=HGNC:13581 | ||
| + | |gene_symbol=FBXO2 | ||
| + | |gene_synonyms=FBX2 Fbg1 Fbs1 Nfb42 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:13581 | ||
|nearest_ensembl=ENSG00000132879 | |nearest_ensembl=ENSG00000132879 | ||
|nearest_promoter_id=NM_001304791 | |nearest_promoter_id=NM_001304791 | ||
|nearest_refseq=NM_033182 | |nearest_refseq=NM_033182 | ||
|nearest_unigene=Hs.556006 | |nearest_unigene=Hs.556006 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=11654389 | ||
| + | |strand=- | ||
|tata_box="-68(GGCCTTTAAGAG,-,0.00),-67(GCCTTTAAGAGG,-,0.00),-66(CCTTTAAGAGGC,+,0.00)" | |tata_box="-68(GGCCTTTAAGAG,-,0.00),-67(GCCTTTAAGAGG,-,0.00),-66(CCTTTAAGAGGC,+,0.00)" | ||
| + | |transcript_name=BC025233 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10298.1 | |tss_id=hg_10298.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:49, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC025233 |
|---|---|
| Distance: | -15 |
| Num_trans: | 18 |
| All_trans: | BC025233:-15 BC096747:-31 AK313019:-31 AK308531:46 DQ892848:48 DQ892849:48 DQ896095:48 BC014957:-49 CR542110:50 KJ898609:50 CU692940:50 AB463629:50 ENST00000466919.1:193 uc057cgi.1:193 ENST00000354287.4:-282 uc001asj.4:-282 AF187318:-282 NM_012168:-431 |
TATA-Box annotation
| Distance to TSS: | 20 |
|---|---|
| Nearest PromoterID: | NM_001304791 |
| Entrez ID: | 93611 |
| Nearest Unigene: | Hs.556006 |
| Nearest Refseq: | NM_033182 |
| Nearest Ensembl: | ENSG00000132879 |
| Gene Name: | F-box protein 2 |
| Gene Alias: | FBG3 |
| Gene Description: | F-box protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-68(GGCCTTTAAGAG,-,0.00),-67(GCCTTTAAGAGG,-,0.00),-66(CCTTTAAGAGGC,+,0.00)" |
