Difference between revisions of "TSS:Hg 102996.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=137 |entrez_id=6836 |gc_percent=0.746269 |gene_alias=ERV29 |gene_description=surfeit 4 |gene_name=SURF4 |gene_type=protein-codin...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=BC111023:0 BX647961:5 ENST00000371991.3:-9 uc064wvc.1:-9 ENST00000371982.3:14 uc064wvd.1:14 AF078866:-24 AF078867:-24 AK293434:24 AK300004:-25 AK299656:-26 AK303309:-26 AK316480:-26 AK295435:-29 ENST00000467910.5:33 uc064wvb.1:33 BC018741:35 AB528538:50 DQ892024:53 DQ895216:53 AM392907:53 KJ892231:54 CU676306:54 ENST00000371989.7:-65 ENST00000485435.6:-65 uc004cdj.5:-65 uc064wuz.1:-65 Y14820:76 AK315488:-84 ENST00000545297.5:-132 ENST00000613129.4:-132 ENST00000618229.4:-132 NM_033161:-132 NM_001280792:-132 NM_001280791:-132 NM_001280790:-132 NM_001280789:-132 NM_001280793:-132 uc011mdd.4:-132 uc011mdb.4:-132 uc011mdc.4:-132 AK301737:459 AK310333:462 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=0 | ||
|distance_to_tss=137 | |distance_to_tss=137 | ||
| + | |end=133376034 | ||
|entrez_id=6836 | |entrez_id=6836 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
|gene_alias=ERV29 | |gene_alias=ERV29 | ||
|gene_description=surfeit 4 | |gene_description=surfeit 4 | ||
| − | |gene_name=SURF4 | + | |gene_id=6836 |
| + | |gene_name=surfeit 4 | ||
| + | |gene_source=HGNC:11476 | ||
| + | |gene_symbol=SURF4 | ||
| + | |gene_synonyms=ERV29 FLJ22993 MGC102753 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11476 | ||
|nearest_ensembl=ENSG00000148248 | |nearest_ensembl=ENSG00000148248 | ||
|nearest_promoter_id=NM_001280793 | |nearest_promoter_id=NM_001280793 | ||
|nearest_refseq=NM_033161 | |nearest_refseq=NM_033161 | ||
|nearest_unigene=Hs.512465 | |nearest_unigene=Hs.512465 | ||
| + | |num_trans=43 | ||
| + | |species=human | ||
| + | |start=133376023 | ||
| + | |strand=- | ||
| + | |transcript_name=BC111023 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102996.1 | |tss_id=hg_102996.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:50, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC111023 |
|---|---|
| Distance: | 0 |
| Num_trans: | 43 |
| All_trans: | BC111023:0 BX647961:5 ENST00000371991.3:-9 uc064wvc.1:-9 ENST00000371982.3:14 uc064wvd.1:14 AF078866:-24 AF078867:-24 AK293434:24 AK300004:-25 AK299656:-26 AK303309:-26 AK316480:-26 AK295435:-29 ENST00000467910.5:33 uc064wvb.1:33 BC018741:35 AB528538:50 DQ892024:53 DQ895216:53 AM392907:53 KJ892231:54 CU676306:54 ENST00000371989.7:-65 ENST00000485435.6:-65 uc004cdj.5:-65 uc064wuz.1:-65 Y14820:76 AK315488:-84 ENST00000545297.5:-132 ENST00000613129.4:-132 ENST00000618229.4:-132 NM_033161:-132 NM_001280792:-132 NM_001280791:-132 NM_001280790:-132 NM_001280789:-132 NM_001280793:-132 uc011mdd.4:-132 uc011mdb.4:-132 uc011mdc.4:-132 AK301737:459 AK310333:462 |
TATA-Box annotation
| Distance to TSS: | 137 |
|---|---|
| Nearest PromoterID: | NM_001280793 |
| Entrez ID: | 6836 |
| Nearest Unigene: | Hs.512465 |
| Nearest Refseq: | NM_033161 |
| Nearest Ensembl: | ENSG00000148248 |
| Gene Name: | surfeit 4 |
| Gene Alias: | ERV29 |
| Gene Description: | surfeit 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
