Difference between revisions of "TSS:Hg 103000.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=113 |entrez_id=57109 |gc_percent=0.701493 |gene_alias=REX4|XPMC2|XPMC2H |gene_description="REX4 homolog, 3'-5' exonuclease" |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |XPMC2= | ||
| + | |XPMC2H= | ||
| + | |all_trans=ENST00000454825.1:0 uc064wvi.1:0 BC009274:0 AK310164:0 ENST00000478037.1:8 uc064wvk.1:8 AK315904:-11 AK314333:-11 BC071691:12 AK304547:-12 ENST00000494045.5:13 uc064wvj.1:13 AK025493:22 AL136894:-28 ENST00000371942.7:-45 uc004cdm.5:-45 AF273304:-45 AF295774:-45 ENST00000371935.6:-97 NM_020385:-97 NM_001279350:-97 NM_001279349:-97 NR_103996:-97 NR_103995:-97 uc033dkm.2:-97 AM392617:119 DQ891911:123 KJ899305:123 DQ895096:123 CU679283:123 NM_001279351:-173 AK295982:-173 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=0 | ||
|distance_to_tss=113 | |distance_to_tss=113 | ||
| + | |end=133417999 | ||
|entrez_id=57109 | |entrez_id=57109 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
|gene_alias=REX4|XPMC2|XPMC2H | |gene_alias=REX4|XPMC2|XPMC2H | ||
|gene_description="REX4 homolog, 3'-5' exonuclease" | |gene_description="REX4 homolog, 3'-5' exonuclease" | ||
| − | |gene_name=REXO4 | + | |gene_id=57109 |
| + | |gene_name="REX4 homolog, 3'-5' exonuclease" | ||
| + | |gene_source=HGNC:12820 | ||
| + | |gene_symbol=REXO4 | ||
| + | |gene_synonyms=hPMC2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12820 | ||
|nearest_ensembl=ENSG00000148300 | |nearest_ensembl=ENSG00000148300 | ||
|nearest_promoter_id=NR_103996 | |nearest_promoter_id=NR_103996 | ||
|nearest_refseq=NM_020385 | |nearest_refseq=NM_020385 | ||
|nearest_unigene=Hs.438409 | |nearest_unigene=Hs.438409 | ||
| + | |num_trans=32 | ||
| + | |species=human | ||
| + | |start=133417966 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000454825.1 uc064wvi.1 BC009274 AK310164 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103000.1 | |tss_id=hg_103000.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0C4DG31 Q9GZR2 | ||
}} | }} | ||
Revision as of 19:50, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000454825.1 uc064wvi.1 BC009274 AK310164 |
|---|---|
| Distance: | 0 |
| Num_trans: | 32 |
| All_trans: | ENST00000454825.1:0 uc064wvi.1:0 BC009274:0 AK310164:0 ENST00000478037.1:8 uc064wvk.1:8 AK315904:-11 AK314333:-11 BC071691:12 AK304547:-12 ENST00000494045.5:13 uc064wvj.1:13 AK025493:22 AL136894:-28 ENST00000371942.7:-45 uc004cdm.5:-45 AF273304:-45 AF295774:-45 ENST00000371935.6:-97 NM_020385:-97 NM_001279350:-97 NM_001279349:-97 NR_103996:-97 NR_103995:-97 uc033dkm.2:-97 AM392617:119 DQ891911:123 KJ899305:123 DQ895096:123 CU679283:123 NM_001279351:-173 AK295982:-173 |
TATA-Box annotation
| Distance to TSS: | 113 |
|---|---|
| Nearest PromoterID: | NR_103996 |
| Entrez ID: | 57109 |
| Nearest Unigene: | Hs.438409 |
| Nearest Refseq: | NM_020385 |
| Nearest Ensembl: | ENSG00000148300 |
| Gene Name: | "REX4 homolog, 3'-5' exonuclease" |
| Gene Alias: | REX4 |
| Gene Description: | "REX4 homolog, 3'-5' exonuclease" |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
