Difference between revisions of "TSS:Hg 10303.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=264 |entrez_id=10459 |gc_percent=0.691542 |gene_alias=FANCV|MAD2B|POLZ2|REV7 |gene_description=MAD2 mitotic arrest deficient-li...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |MAD2B= | ||
| + | |POLZ2= | ||
| + | |REV7= | ||
| + | |all_trans=ENST00000445656.5:-133 ENST00000376664.10:-133 uc057cgt.1:-133 uc057cgv.1:-133 ENST00000376669.9:-140 uc057cgs.1:-140 AK027327:-149 AF139365:-152 ENST00000456915.1:-153 uc057cgu.1:-153 ENST00000376692.8:-236 NM_006341:-236 uc001asp.4:-236 AF157482:-236 AF080398:309 AF072933:310 BC015244:320 CU677251:322 DQ891038:322 DQ894217:322 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=-133 | ||
|distance_to_tss=264 | |distance_to_tss=264 | ||
| + | |end=11680978 | ||
|entrez_id=10459 | |entrez_id=10459 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
|gene_alias=FANCV|MAD2B|POLZ2|REV7 | |gene_alias=FANCV|MAD2B|POLZ2|REV7 | ||
|gene_description=MAD2 mitotic arrest deficient-like 2 (yeast) | |gene_description=MAD2 mitotic arrest deficient-like 2 (yeast) | ||
| − | |gene_name=MAD2L2 | + | |gene_id=10459 |
| + | |gene_name=MAD2 mitotic arrest deficient-like 2 (yeast) | ||
| + | |gene_source=HGNC:6764 | ||
| + | |gene_symbol=MAD2L2 | ||
| + | |gene_synonyms=MAD2B POLZ2 REV7 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:6764 | ||
|nearest_ensembl=ENSG00000116670 | |nearest_ensembl=ENSG00000116670 | ||
|nearest_promoter_id=NM_006341 | |nearest_promoter_id=NM_006341 | ||
|nearest_refseq=NM_006341 | |nearest_refseq=NM_006341 | ||
|nearest_unigene=Hs.19400 | |nearest_unigene=Hs.19400 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=11680922 | ||
| + | |strand=- | ||
|tata_box="71(CCTTTTCGGGGG,+,0.00)" | |tata_box="71(CCTTTTCGGGGG,+,0.00)" | ||
| + | |transcript_name=ENST00000445656.5 ENST00000376664.10 uc057cgt.1 uc057cgv.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10303.1 | |tss_id=hg_10303.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B1AK43 | ||
}} | }} | ||
Revision as of 19:51, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000445656.5 ENST00000376664.10 uc057cgt.1 uc057cgv.1 |
|---|---|
| Distance: | -133 |
| Num_trans: | 20 |
| All_trans: | ENST00000445656.5:-133 ENST00000376664.10:-133 uc057cgt.1:-133 uc057cgv.1:-133 ENST00000376669.9:-140 uc057cgs.1:-140 AK027327:-149 AF139365:-152 ENST00000456915.1:-153 uc057cgu.1:-153 ENST00000376692.8:-236 NM_006341:-236 uc001asp.4:-236 AF157482:-236 AF080398:309 AF072933:310 BC015244:320 CU677251:322 DQ891038:322 DQ894217:322 |
TATA-Box annotation
| Distance to TSS: | 264 |
|---|---|
| Nearest PromoterID: | NM_006341 |
| Entrez ID: | 10459 |
| Nearest Unigene: | Hs.19400 |
| Nearest Refseq: | NM_006341 |
| Nearest Ensembl: | ENSG00000116670 |
| Gene Name: | MAD2 mitotic arrest deficient-like 2 (yeast) |
| Gene Alias: | FANCV |
| Gene Description: | MAD2 mitotic arrest deficient-like 2 (yeast) |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "71(CCTTTTCGGGGG,+,0.00)" |
