Difference between revisions of "TSS:Hg 103042.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=31 |entrez_id=7410 |gc_percent=0.781095 |gene_alias=VAV-2 |gene_description=vav guanine nucleotide exchange factor 2 |gene_name...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=S76992:8 AB587478:9 ENST00000406606.7:10 uc004cer.4:10 ENST00000371850.7:-15 uc004ces.4:-15 NM_001134398:-29 NM_003371:-29 BC132965:-29 BC132967:-29 ENST00000486113.1:32 uc064wwi.1:32 BX640754:127 ENST00000371851.1:-309 uc064wwh.1:-309 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=8 | ||
|distance_to_tss=31 | |distance_to_tss=31 | ||
| + | |end=133992295 | ||
|entrez_id=7410 | |entrez_id=7410 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
|gene_alias=VAV-2 | |gene_alias=VAV-2 | ||
|gene_description=vav guanine nucleotide exchange factor 2 | |gene_description=vav guanine nucleotide exchange factor 2 | ||
| − | |gene_name=VAV2 | + | |gene_id=7410 |
| + | |gene_name=vav guanine nucleotide exchange factor 2 | ||
| + | |gene_source=HGNC:12658 | ||
| + | |gene_symbol=VAV2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12658 | ||
|nearest_ensembl=ENSG00000160293 | |nearest_ensembl=ENSG00000160293 | ||
|nearest_promoter_id=NM_003371 | |nearest_promoter_id=NM_003371 | ||
|nearest_refseq=NM_003371 | |nearest_refseq=NM_003371 | ||
|nearest_unigene=Hs.369921 | |nearest_unigene=Hs.369921 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=133992290 | ||
| + | |strand=- | ||
| + | |transcript_name=S76992 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103042.1 | |tss_id=hg_103042.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:52, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | S76992 |
|---|---|
| Distance: | 8 |
| Num_trans: | 15 |
| All_trans: | S76992:8 AB587478:9 ENST00000406606.7:10 uc004cer.4:10 ENST00000371850.7:-15 uc004ces.4:-15 NM_001134398:-29 NM_003371:-29 BC132965:-29 BC132967:-29 ENST00000486113.1:32 uc064wwi.1:32 BX640754:127 ENST00000371851.1:-309 uc064wwh.1:-309 |
TATA-Box annotation
| Distance to TSS: | 31 |
|---|---|
| Nearest PromoterID: | NM_003371 |
| Entrez ID: | 7410 |
| Nearest Unigene: | Hs.369921 |
| Nearest Refseq: | NM_003371 |
| Nearest Ensembl: | ENSG00000160293 |
| Gene Name: | vav guanine nucleotide exchange factor 2 |
| Gene Alias: | VAV-2 |
| Gene Description: | vav guanine nucleotide exchange factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
