Difference between revisions of "TSS:Hg 103152.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=82 |entrez_id=64170 |gc_percent=0.656716 |gene_alias=CANDF2|hCARD9 |gene_description=caspase recruitment domain family member 9...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AF311287:-22 AK292081:-24 ENST00000481053.5:-35 uc064xbk.1:-35 BC070091:-35 AK295647:-35 ENST00000556340.1:-37 uc064xbp.1:-37 AK309043:-37 BC035805:-45 BC008877:-47 ENST00000489932.2:-50 uc064xbo.1:-50 AK024001:-50 ENST00000371734.7:-72 ENST00000371732.9:-72 NM_052814:-72 NM_052813:-72 uc004chg.4:-72 uc064xbm.1:-72 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=-22 | ||
|distance_to_tss=82 | |distance_to_tss=82 | ||
| + | |end=136373609 | ||
|entrez_id=64170 | |entrez_id=64170 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=CANDF2|hCARD9 | |gene_alias=CANDF2|hCARD9 | ||
|gene_description=caspase recruitment domain family member 9 | |gene_description=caspase recruitment domain family member 9 | ||
| − | |gene_name=CARD9 | + | |gene_id=64170 |
| + | |gene_name=caspase recruitment domain family member 9 | ||
| + | |gene_source=HGNC:16391 | ||
| + | |gene_symbol=CARD9 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hCARD9= | ||
| + | |hgnc_mgi_id=HGNC:16391 | ||
|nearest_ensembl=ENSG00000187796 | |nearest_ensembl=ENSG00000187796 | ||
|nearest_promoter_id=NM_052813 | |nearest_promoter_id=NM_052813 | ||
|nearest_refseq=NM_052813 | |nearest_refseq=NM_052813 | ||
|nearest_unigene=Hs.694071 | |nearest_unigene=Hs.694071 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=136373588 | ||
| + | |strand=- | ||
| + | |transcript_name=AF311287 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103152.1 | |tss_id=hg_103152.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:57, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AF311287 |
|---|---|
| Distance: | -22 |
| Num_trans: | 20 |
| All_trans: | AF311287:-22 AK292081:-24 ENST00000481053.5:-35 uc064xbk.1:-35 BC070091:-35 AK295647:-35 ENST00000556340.1:-37 uc064xbp.1:-37 AK309043:-37 BC035805:-45 BC008877:-47 ENST00000489932.2:-50 uc064xbo.1:-50 AK024001:-50 ENST00000371734.7:-72 ENST00000371732.9:-72 NM_052814:-72 NM_052813:-72 uc004chg.4:-72 uc064xbm.1:-72 |
TATA-Box annotation
| Distance to TSS: | 82 |
|---|---|
| Nearest PromoterID: | NM_052813 |
| Entrez ID: | 64170 |
| Nearest Unigene: | Hs.694071 |
| Nearest Refseq: | NM_052813 |
| Nearest Ensembl: | ENSG00000187796 |
| Gene Name: | caspase recruitment domain family member 9 |
| Gene Alias: | CANDF2 |
| Gene Description: | caspase recruitment domain family member 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
