Difference between revisions of "TSS:Hg 103158.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.175 |distance_to_tss=1 |entrez_id=23203 |gc_percent=0.776119 |gene_alias=Alpha-MPP|INPP5E|P-55|SCAR2 |gene_description="peptidase, mitochondrial pro...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |INPP5E= | ||
| + | |P-55= | ||
| + | |SCAR2= | ||
| + | |all_trans=ENST00000371723.4:0 uc064xbw.1:0 ENST00000371725.7:-6 uc004chk.4:-6 NM_001039708:-8 NM_006643:-8 NM_001039707:-8 ENST00000298537.11:-15 uc004chj.4:-15 ENST00000357365.7:27 uc004chi.4:27 BC014515:85 ENST00000446833.1:286 uc064xbx.1:286 DQ893083:419 DQ896349:419 AY349357:419 KJ902160:419 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
| + | |distance=0 | ||
|distance_to_tss=1 | |distance_to_tss=1 | ||
| + | |end=136410594 | ||
|entrez_id=23203 | |entrez_id=23203 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
|gene_alias=Alpha-MPP|INPP5E|P-55|SCAR2 | |gene_alias=Alpha-MPP|INPP5E|P-55|SCAR2 | ||
|gene_description="peptidase, mitochondrial processing alpha subunit" | |gene_description="peptidase, mitochondrial processing alpha subunit" | ||
| − | |gene_name= | + | |gene_id=10807 |
| + | |gene_name=serologically defined colon cancer antigen 3 | ||
| + | |gene_source=HGNC:10667 | ||
| + | |gene_symbol=SDCCAG3 | ||
| + | |gene_synonyms=NY-CO-3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10667 | ||
|nearest_ensembl=ENSG00000165688 | |nearest_ensembl=ENSG00000165688 | ||
|nearest_promoter_id=NM_001282944 | |nearest_promoter_id=NM_001282944 | ||
|nearest_refseq=NM_015160 | |nearest_refseq=NM_015160 | ||
|nearest_unigene=Hs.495471 | |nearest_unigene=Hs.495471 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=136410553 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000371723.4 uc064xbw.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103158.1 | |tss_id=hg_103158.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0A0MRP9 | ||
}} | }} | ||
Revision as of 19:57, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000371723.4 uc064xbw.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000371723.4:0 uc064xbw.1:0 ENST00000371725.7:-6 uc004chk.4:-6 NM_001039708:-8 NM_006643:-8 NM_001039707:-8 ENST00000298537.11:-15 uc004chj.4:-15 ENST00000357365.7:27 uc004chi.4:27 BC014515:85 ENST00000446833.1:286 uc064xbx.1:286 DQ893083:419 DQ896349:419 AY349357:419 KJ902160:419 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_001282944 |
| Entrez ID: | 23203 |
| Nearest Unigene: | Hs.495471 |
| Nearest Refseq: | NM_015160 |
| Nearest Ensembl: | ENSG00000165688 |
| Gene Name: | serologically defined colon cancer antigen 3 |
| Gene Alias: | Alpha-MPP |
| Gene Description: | "peptidase, mitochondrial processing alpha subunit" |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
