Difference between revisions of "TSS:Hg 103203.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=4 |entrez_id=158062 |gc_percent=0.621891 |gene_alias=LCN5|UNQ643|hLcn5 |gene_description=lipocalin 6 |gene_name=LCN6 |gene_type=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |UNQ643= | ||
| + | |all_trans=ENST00000341206.8:0 NM_198946:0 uc004ciy.4:0 BC062746:0 AF303084:0 AY358598:9 HQ257933:33 AY301269:34 KJ900325:34 ENST00000435202.5:64 uc064xdi.1:64 BC026910:64 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=0 | ||
|distance_to_tss=4 | |distance_to_tss=4 | ||
| + | |end=136748531 | ||
|entrez_id=158062 | |entrez_id=158062 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
|gene_alias=LCN5|UNQ643|hLcn5 | |gene_alias=LCN5|UNQ643|hLcn5 | ||
|gene_description=lipocalin 6 | |gene_description=lipocalin 6 | ||
| − | |gene_name=LCN6 | + | |gene_id=158062 |
| + | |gene_name=lipocalin 6 | ||
| + | |gene_source=HGNC:17337 | ||
| + | |gene_symbol=LCN6 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hLcn5= | ||
| + | |hgnc_mgi_id=HGNC:17337 | ||
|nearest_ensembl=ENSG00000204003 | |nearest_ensembl=ENSG00000204003 | ||
|nearest_promoter_id=NM_198946 | |nearest_promoter_id=NM_198946 | ||
|nearest_refseq=NM_198946 | |nearest_refseq=NM_198946 | ||
|nearest_unigene=Hs.522504 | |nearest_unigene=Hs.522504 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=136748516 | ||
| + | |strand=- | ||
|tata_box="-32(CCATATAAACGG,+,0.00)" | |tata_box="-32(CCATATAAACGG,+,0.00)" | ||
| + | |transcript_name=ENST00000341206.8 NM_198946 uc004ciy.4 BC062746 AF303084 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103203.1 | |tss_id=hg_103203.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R8I9 P62502 | ||
}} | }} | ||
Revision as of 19:59, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000341206.8 NM_198946 uc004ciy.4 BC062746 AF303084 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000341206.8:0 NM_198946:0 uc004ciy.4:0 BC062746:0 AF303084:0 AY358598:9 HQ257933:33 AY301269:34 KJ900325:34 ENST00000435202.5:64 uc064xdi.1:64 BC026910:64 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_198946 |
| Entrez ID: | 158062 |
| Nearest Unigene: | Hs.522504 |
| Nearest Refseq: | NM_198946 |
| Nearest Ensembl: | ENSG00000204003 |
| Gene Name: | lipocalin 6 |
| Gene Alias: | LCN5 |
| Gene Description: | lipocalin 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-32(CCATATAAACGG,+,0.00)" |
