Difference between revisions of "TSS:Hg 103335.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=-118 |entrez_id=727800 |gc_percent=0.731343 |gene_alias=- |gene_description=ring finger protein 208 |gene_name=RNF208 |gene_type...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000391553.2:104 NM_031297:104 uc004clz.2:104 ENST00000392827.2:-125 uc064xks.1:-125 BC090061:277 AL136540:421 AF416715:423 BC016958:442 AM393547:457 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=104 | ||
|distance_to_tss=-118 | |distance_to_tss=-118 | ||
| + | |end=137221456 | ||
|entrez_id=727800 | |entrez_id=727800 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=ring finger protein 208 | |gene_description=ring finger protein 208 | ||
| − | |gene_name=RNF208 | + | |gene_id=727800 |
| + | |gene_name=ring finger protein 208 | ||
| + | |gene_source=HGNC:25420 | ||
| + | |gene_symbol=RNF208 | ||
| + | |gene_synonyms=DKFZP761H1710 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25420 | ||
|nearest_ensembl=ENSG00000212864 | |nearest_ensembl=ENSG00000212864 | ||
|nearest_promoter_id=NM_031297 | |nearest_promoter_id=NM_031297 | ||
|nearest_refseq=NM_031297 | |nearest_refseq=NM_031297 | ||
|nearest_unigene=Hs.512767 | |nearest_unigene=Hs.512767 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=137221426 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000391553.2 NM_031297 uc004clz.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103335.1 | |tss_id=hg_103335.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9H0X6 | ||
}} | }} | ||
Revision as of 20:04, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000391553.2 NM_031297 uc004clz.2 |
|---|---|
| Distance: | 104 |
| Num_trans: | 10 |
| All_trans: | ENST00000391553.2:104 NM_031297:104 uc004clz.2:104 ENST00000392827.2:-125 uc064xks.1:-125 BC090061:277 AL136540:421 AF416715:423 BC016958:442 AM393547:457 |
TATA-Box annotation
| Distance to TSS: | -118 |
|---|---|
| Nearest PromoterID: | NM_031297 |
| Entrez ID: | 727800 |
| Nearest Unigene: | Hs.512767 |
| Nearest Refseq: | NM_031297 |
| Nearest Ensembl: | ENSG00000212864 |
| Gene Name: | ring finger protein 208 |
| Gene Alias: | - |
| Gene Description: | ring finger protein 208 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
