Difference between revisions of "TSS:Hg 103613.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=128 |entrez_id=1645 |gc_percent=0.477612 |gene_alias=2-ALPHA-HSD|20-ALPHA-HSD|C9|DD1|DD1/DD2|DDH|DDH1|H-37|HAKRC|HBAB|MBAB |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |20-ALPHA-HSD= | ||
| + | |C9= | ||
| + | |DD1= | ||
| + | |DD1/DD2= | ||
| + | |DDH= | ||
| + | |DDH1= | ||
| + | |H-37= | ||
| + | |HAKRC= | ||
| + | |HBAB= | ||
| + | |MBAB= | ||
| + | |all_trans=AK310658:23 AK303435:28 BC020216:37 BC015490:48 M86609:48 U05684:50 DQ891484:51 DQ893923:51 ENST00000434459.6:53 uc057rig.1:53 CU677313:53 BT007197:53 AB031083:53 DQ269985:53 KJ896694:53 ENST00000442997.5:57 uc057rih.1:57 S68290:62 D26124:102 NM_001353:-127 ENST00000477661.1:-136 ENST00000380872.8:-136 uc009xhx.3:-136 uc001ihq.4:-136 ENST00000380859.1:397 uc057rii.1:397 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=23 | ||
|distance_to_tss=128 | |distance_to_tss=128 | ||
| + | |end=4963392 | ||
|entrez_id=1645 | |entrez_id=1645 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
|gene_alias=2-ALPHA-HSD|20-ALPHA-HSD|C9|DD1|DD1/DD2|DDH|DDH1|H-37|HAKRC|HBAB|MBAB | |gene_alias=2-ALPHA-HSD|20-ALPHA-HSD|C9|DD1|DD1/DD2|DDH|DDH1|H-37|HAKRC|HBAB|MBAB | ||
|gene_description=aldo-keto reductase family 1 member C1 | |gene_description=aldo-keto reductase family 1 member C1 | ||
| − | |gene_name=AKR1C1 | + | |gene_id=1645 |
| + | |gene_name="aldo-keto reductase family 1, member C1" | ||
| + | |gene_source=HGNC:384 | ||
| + | |gene_symbol=AKR1C1 | ||
| + | |gene_synonyms=DD1 DDH HAKRC MBAB | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:384 | ||
|nearest_ensembl=ENSG00000187134 | |nearest_ensembl=ENSG00000187134 | ||
|nearest_promoter_id=NM_001353 | |nearest_promoter_id=NM_001353 | ||
|nearest_refseq=NM_001353 | |nearest_refseq=NM_001353 | ||
|nearest_unigene=Hs.460260 | |nearest_unigene=Hs.460260 | ||
| + | |num_trans=26 | ||
| + | |species=human | ||
| + | |start=4963388 | ||
| + | |strand=+ | ||
|tata_box="-5(GCTCTTATAGCC,+,0.00)" | |tata_box="-5(GCTCTTATAGCC,+,0.00)" | ||
| + | |transcript_name=AK310658 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103613.1 | |tss_id=hg_103613.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:16, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK310658 |
|---|---|
| Distance: | 23 |
| Num_trans: | 26 |
| All_trans: | AK310658:23 AK303435:28 BC020216:37 BC015490:48 M86609:48 U05684:50 DQ891484:51 DQ893923:51 ENST00000434459.6:53 uc057rig.1:53 CU677313:53 BT007197:53 AB031083:53 DQ269985:53 KJ896694:53 ENST00000442997.5:57 uc057rih.1:57 S68290:62 D26124:102 NM_001353:-127 ENST00000477661.1:-136 ENST00000380872.8:-136 uc009xhx.3:-136 uc001ihq.4:-136 ENST00000380859.1:397 uc057rii.1:397 |
TATA-Box annotation
| Distance to TSS: | 128 |
|---|---|
| Nearest PromoterID: | NM_001353 |
| Entrez ID: | 1645 |
| Nearest Unigene: | Hs.460260 |
| Nearest Refseq: | NM_001353 |
| Nearest Ensembl: | ENSG00000187134 |
| Gene Name: | "aldo-keto reductase family 1, member C1" |
| Gene Alias: | 2-ALPHA-HSD |
| Gene Description: | aldo-keto reductase family 1 member C1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-5(GCTCTTATAGCC,+,0.00)" |
