Difference between revisions of "TSS:Hg 103711.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=65 |entrez_id=439949 |gc_percent=0.800995 |gene_alias=- |gene_description=PRKCQ antisense RNA 1 |gene_name=PRKCQ-AS1 |gene_type...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AY007155:24 ENST00000455810.5:-40 NR_036503:-40 NR_036502:-40 uc021pmt.2:-40 ENST00000445427.1:-46 uc001ijl.4:-46 ENST00000613651.1:96 uc057rnj.1:96 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=24 | ||
|distance_to_tss=65 | |distance_to_tss=65 | ||
| + | |end=6580515 | ||
|entrez_id=439949 | |entrez_id=439949 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=PRKCQ antisense RNA 1 | |gene_description=PRKCQ antisense RNA 1 | ||
| − | |gene_name=PRKCQ-AS1 | + | |gene_id=439949 |
| + | |gene_name=PRKCQ antisense RNA 1 | ||
| + | |gene_source=HGNC:44689 | ||
| + | |gene_symbol=PRKCQ-AS1 | ||
| + | |gene_synonyms=ENST00000414894.1 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:44689 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_036502 | |nearest_promoter_id=NR_036502 | ||
|nearest_refseq=NR_036502 | |nearest_refseq=NR_036502 | ||
|nearest_unigene=Hs.13262 | |nearest_unigene=Hs.13262 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=6580464 | ||
| + | |strand=+ | ||
| + | |transcript_name=AY007155 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103711.1 | |tss_id=hg_103711.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:21, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AY007155 |
|---|---|
| Distance: | 24 |
| Num_trans: | 9 |
| All_trans: | AY007155:24 ENST00000455810.5:-40 NR_036503:-40 NR_036502:-40 uc021pmt.2:-40 ENST00000445427.1:-46 uc001ijl.4:-46 ENST00000613651.1:96 uc057rnj.1:96 |
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NR_036502 |
| Entrez ID: | 439949 |
| Nearest Unigene: | Hs.13262 |
| Nearest Refseq: | NR_036502 |
| Nearest Ensembl: | |
| Gene Name: | PRKCQ antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | PRKCQ antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.125 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
