Difference between revisions of "TSS:Hg 103716.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=-2979 |entrez_id=5588 |gc_percent=0.492537 |gene_alias=PRKCT|nPKC-theta |gene_description=protein kinase C theta |gene_name=PRK...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000414894.1:43 uc057rnk.1:43 ENST00000449648.1:46 uc057rnl.1:46 ENST00000607982.5:172 ENST00000608526.5:172 ENST00000623015.3:172 ENST00000615210.4:172 ENST00000613985.4:172 uc057rnm.1:172 uc057rnn.1:172 uc057rno.1:172 uc057rnp.1:172 uc057rnq.1:172 ENST00000625102.3:178 uc057rnr.1:178 ENST00000624974.3:198 ENST00000623160.3:198 ENST00000624678.3:198 uc057rns.1:198 uc057rnt.1:198 uc057rnu.1:198 ENST00000625147.3:228 uc057rnv.1:228 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| + | |distance=43 | ||
|distance_to_tss=-2979 | |distance_to_tss=-2979 | ||
| + | |end=6583633 | ||
|entrez_id=5588 | |entrez_id=5588 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
|gene_alias=PRKCT|nPKC-theta | |gene_alias=PRKCT|nPKC-theta | ||
|gene_description=protein kinase C theta | |gene_description=protein kinase C theta | ||
| − | |gene_name=PRKCQ | + | |gene_id= |
| + | |gene_name=PRKCQ antisense RNA 1 | ||
| + | |gene_source=HGNC:44689 | ||
| + | |gene_symbol=PRKCQ-AS1 | ||
| + | |gene_synonyms=ENST00000414894.1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:44689 | ||
| + | |nPKC-theta= | ||
|nearest_ensembl=ENSG00000065675 | |nearest_ensembl=ENSG00000065675 | ||
|nearest_promoter_id=NM_001323265 | |nearest_promoter_id=NM_001323265 | ||
|nearest_refseq=NM_006257 | |nearest_refseq=NM_006257 | ||
|nearest_unigene=Hs.498570 | |nearest_unigene=Hs.498570 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=6583616 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000414894.1 uc057rnk.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103716.1 | |tss_id=hg_103716.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:21, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000414894.1 uc057rnk.1 |
|---|---|
| Distance: | 43 |
| Num_trans: | 24 |
| All_trans: | ENST00000414894.1:43 uc057rnk.1:43 ENST00000449648.1:46 uc057rnl.1:46 ENST00000607982.5:172 ENST00000608526.5:172 ENST00000623015.3:172 ENST00000615210.4:172 ENST00000613985.4:172 uc057rnm.1:172 uc057rnn.1:172 uc057rno.1:172 uc057rnp.1:172 uc057rnq.1:172 ENST00000625102.3:178 uc057rnr.1:178 ENST00000624974.3:198 ENST00000623160.3:198 ENST00000624678.3:198 uc057rns.1:198 uc057rnt.1:198 uc057rnu.1:198 ENST00000625147.3:228 uc057rnv.1:228 |
TATA-Box annotation
| Distance to TSS: | -2979 |
|---|---|
| Nearest PromoterID: | NM_001323265 |
| Entrez ID: | 5588 |
| Nearest Unigene: | Hs.498570 |
| Nearest Refseq: | NM_006257 |
| Nearest Ensembl: | ENSG00000065675 |
| Gene Name: | PRKCQ antisense RNA 1 |
| Gene Alias: | PRKCT |
| Gene Description: | protein kinase C theta |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
