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Difference between revisions of "TSS:Hg 103719.1"

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(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-3129 |entrez_id=5588 |gc_percent=0.542289 |gene_alias=PRKCT|nPKC-theta |gene_description=protein kinase C theta |gene_name=PRKC...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|all_trans=ENST00000607982.5:27 ENST00000608526.5:27 ENST00000623015.3:27 ENST00000615210.4:27 ENST00000613985.4:27 uc057rnm.1:27 uc057rnn.1:27 uc057rno.1:27 uc057rnp.1:27 uc057rnq.1:27 ENST00000625102.3:33 uc057rnr.1:33 ENST00000624974.3:53 ENST00000623160.3:53 ENST00000624678.3:53 uc057rns.1:53 uc057rnt.1:53 uc057rnu.1:53 ENST00000625147.3:83 uc057rnv.1:83 ENST00000449648.1:-93 uc057rnl.1:-93 ENST00000414894.1:-96 uc057rnk.1:-96
 +
|chr=chr10
 
|cpg_percent=0.03
 
|cpg_percent=0.03
 +
|distance=27
 
|distance_to_tss=-3129
 
|distance_to_tss=-3129
 +
|end=6583778
 
|entrez_id=5588
 
|entrez_id=5588
 
|gc_percent=0.542289
 
|gc_percent=0.542289
 
|gene_alias=PRKCT|nPKC-theta
 
|gene_alias=PRKCT|nPKC-theta
 
|gene_description=protein kinase C theta
 
|gene_description=protein kinase C theta
|gene_name=PRKCQ
+
|gene_id=
 +
|gene_name=PRKCQ antisense RNA 1
 +
|gene_source=HGNC:44689
 +
|gene_symbol=PRKCQ-AS1
 +
|gene_synonyms=ENST00000414894.1
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 +
|hgnc_mgi_id=HGNC:44689
 +
|nPKC-theta=
 
|nearest_ensembl=ENSG00000065675
 
|nearest_ensembl=ENSG00000065675
 
|nearest_promoter_id=NM_001323265
 
|nearest_promoter_id=NM_001323265
 
|nearest_refseq=NM_006257
 
|nearest_refseq=NM_006257
 
|nearest_unigene=Hs.498570
 
|nearest_unigene=Hs.498570
 +
|num_trans=24
 +
|species=human
 +
|start=6583771
 +
|strand=+
 +
|transcript_name=ENST00000607982.5 ENST00000608526.5 ENST00000623015.3 ENST00000615210.4 ENST00000613985.4 uc057rnm.1 uc057rnn.1 uc057rno.1 uc057rnp.1 uc057rnq.1
 +
|tss_classification=yes
 
|tss_id=hg_103719.1
 
|tss_id=hg_103719.1
 +
|tss_score=1
 +
|uniprot_id=
 
}}
 
}}

Revision as of 20:21, 8 March 2018

Basic information about the TSS


TSS ID:hg_103719.1
Species:human
Chr:chr10
TSS Classification:yes
Start:6583771
End:6583778
Strand:+
TSS Score:1
Start of the center position in the TSS region:
End of the center position in the TSS region:



Gene and protein annotation


Transcript_name:ENST00000607982.5 ENST00000608526.5 ENST00000623015.3 ENST00000615210.4 ENST00000613985.4 uc057rnm.1 uc057rnn.1 uc057rno.1 uc057rnp.1 uc057rnq.1
Distance:27
GeneID:
HGNC/MGI_ID:HGNC:44689
UniProt_ID:
Gene_name:PRKCQ antisense RNA 1
Gene_symbol:PRKCQ-AS1
Gene_synonyms:ENST00000414894.1
Gene_source:HGNC:44689



Transcript annotation


Transcript_name:ENST00000607982.5 ENST00000608526.5 ENST00000623015.3 ENST00000615210.4 ENST00000613985.4 uc057rnm.1 uc057rnn.1 uc057rno.1 uc057rnp.1 uc057rnq.1
Distance:27
Num_trans:24
All_trans:ENST00000607982.5:27 ENST00000608526.5:27 ENST00000623015.3:27 ENST00000615210.4:27 ENST00000613985.4:27 uc057rnm.1:27 uc057rnn.1:27 uc057rno.1:27 uc057rnp.1:27 uc057rnq.1:27 ENST00000625102.3:33 uc057rnr.1:33 ENST00000624974.3:53 ENST00000623160.3:53 ENST00000624678.3:53 uc057rns.1:53 uc057rnt.1:53 uc057rnu.1:53 ENST00000625147.3:83 uc057rnv.1:83 ENST00000449648.1:-93 uc057rnl.1:-93 ENST00000414894.1:-96 uc057rnk.1:-96



TATA-Box annotation


Distance to TSS:-3129
Nearest PromoterID:NM_001323265
Entrez ID:5588
Nearest Unigene:Hs.498570
Nearest Refseq:NM_006257
Nearest Ensembl:ENSG00000065675
Gene Name:PRKCQ antisense RNA 1
Gene Alias:PRKCT
Gene Description:protein kinase C theta
Gene Type:protein-coding
CpG%:0.03
GC%:0.542289
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):