Difference between revisions of "TSS:Hg 103789.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=-162 |entrez_id=399717 |gc_percent=0.766169 |gene_alias=- |gene_description=GATA3 antisense RNA 1 |gene_name=GATA3-AS1 |gene_typ...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000481743.1:-27 uc057rpk.1:-27 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=-27 | ||
|distance_to_tss=-162 | |distance_to_tss=-162 | ||
| + | |end=8053662 | ||
|entrez_id=399717 | |entrez_id=399717 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=GATA3 antisense RNA 1 | |gene_description=GATA3 antisense RNA 1 | ||
| − | |gene_name=GATA3 | + | |gene_id=2625 |
| + | |gene_name=GATA binding protein 3 | ||
| + | |gene_source=HGNC:4172 | ||
| + | |gene_symbol=GATA3 | ||
| + | |gene_synonyms=HDR | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:4172 | ||
|nearest_ensembl=ENSG00000197308 | |nearest_ensembl=ENSG00000197308 | ||
|nearest_promoter_id=NR_024256 | |nearest_promoter_id=NR_024256 | ||
|nearest_refseq=NM_207423 | |nearest_refseq=NM_207423 | ||
|nearest_unigene=Hs.158992 | |nearest_unigene=Hs.158992 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=8053630 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000481743.1 uc057rpk.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103789.1 | |tss_id=hg_103789.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:24, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000481743.1 uc057rpk.1 |
|---|---|
| Distance: | -27 |
| Num_trans: | 2 |
| All_trans: | ENST00000481743.1:-27 uc057rpk.1:-27 |
TATA-Box annotation
| Distance to TSS: | -162 |
|---|---|
| Nearest PromoterID: | NR_024256 |
| Entrez ID: | 399717 |
| Nearest Unigene: | Hs.158992 |
| Nearest Refseq: | NM_207423 |
| Nearest Ensembl: | ENSG00000197308 |
| Gene Name: | GATA binding protein 3 |
| Gene Alias: | - |
| Gene Description: | GATA3 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.12 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
