Difference between revisions of "TSS:Hg 103844.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=109 |entrez_id=10659 |gc_percent=0.427861 |gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |gene_description="CUGBP, E...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CELF-2= | ||
| + | |CUG-BP2= | ||
| + | |CUGBP2= | ||
| + | |ETR-3= | ||
| + | |ETR3= | ||
| + | |NAPOR= | ||
| + | |all_trans=ENST00000631816.1:-17 AK299548:-17 ENST00000633200.1:-59 AK297380:-59 ENST00000631460.1:-70 ENST00000416382.6:-73 AF090693:-73 NM_001025077:-98 uc031vxc.2:-98 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=-17 | ||
|distance_to_tss=109 | |distance_to_tss=109 | ||
| + | |end=11005417 | ||
|entrez_id=10659 | |entrez_id=10659 | ||
|gc_percent=0.427861 | |gc_percent=0.427861 | ||
|gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR | |gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR | ||
|gene_description="CUGBP, Elav-like family member 2" | |gene_description="CUGBP, Elav-like family member 2" | ||
| − | |gene_name=CELF2 | + | |gene_id=10659 |
| + | |gene_name="CUGBP, Elav-like family member 2" | ||
| + | |gene_source=HGNC:2550 | ||
| + | |gene_symbol=CELF2 | ||
| + | |gene_synonyms=BRUNOL3 Etr-3 NAPOR-2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2550 | ||
|nearest_ensembl=ENSG00000048740 | |nearest_ensembl=ENSG00000048740 | ||
|nearest_promoter_id=NM_001025077 | |nearest_promoter_id=NM_001025077 | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=11005393 | ||
| + | |strand=+ | ||
|tata_box="25(CTGCTTTTAAGG,-,0.00),27(GCTTTTAAGGTA,+,0.00)" | |tata_box="25(CTGCTTTTAAGG,-,0.00),27(GCTTTTAAGGTA,+,0.00)" | ||
| + | |transcript_name=ENST00000631816.1 AK299548 | ||
| + | |tss_classification=no | ||
|tss_id=hg_103844.1 | |tss_id=hg_103844.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DS31 | ||
}} | }} | ||
Revision as of 20:26, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000631816.1 AK299548 |
|---|---|
| Distance: | -17 |
| Num_trans: | 9 |
| All_trans: | ENST00000631816.1:-17 AK299548:-17 ENST00000633200.1:-59 AK297380:-59 ENST00000631460.1:-70 ENST00000416382.6:-73 AF090693:-73 NM_001025077:-98 uc031vxc.2:-98 |
TATA-Box annotation
| Distance to TSS: | 109 |
|---|---|
| Nearest PromoterID: | NM_001025077 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | "CUGBP, Elav-like family member 2" |
| Gene Alias: | BRUNOL3 |
| Gene Description: | "CUGBP, Elav-like family member 2" |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.427861 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "25(CTGCTTTTAAGG,-,0.00),27(GCTTTTAAGGTA,+,0.00)" |
