Personal tools

Difference between revisions of "TSS:Hg 103860.1"

From referenceTSS

Jump to: navigation, search
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=73 |entrez_id=10659 |gc_percent=0.59204 |gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |gene_description="CUGBP, Ela...")
 
Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
 +
|CELF-2=
 +
|CUG-BP2=
 +
|CUGBP2=
 +
|ETR-3=
 +
|ETR3=
 +
|NAPOR=
 +
|all_trans=AK297313:0 AK299992:0 AF036956:0 ENST00000608830.5:22 uc031vxe.2:22 AK293164:22 ENST00000399850.7:-59 ENST00000417956.6:-59 NM_001025076:-59 NM_001083591:-59 uc057rqu.1:-59 uc031vxf.2:-59 AF432906:60 AK299983:-123 AK316354:160 AK304216:338 ENST00000609870.5:366 ENST00000609692.5:366 uc057rqv.1:366 uc057rqw.1:366 AK310038:366 AK302681:366 ENST00000354897.3:368 uc057rqx.1:368 AK295511:410
 +
|chr=chr10
 
|cpg_percent=0.03
 
|cpg_percent=0.03
 +
|distance=0
 
|distance_to_tss=73
 
|distance_to_tss=73
 +
|end=11165118
 
|entrez_id=10659
 
|entrez_id=10659
 
|gc_percent=0.59204
 
|gc_percent=0.59204
 
|gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR
 
|gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR
 
|gene_description="CUGBP, Elav-like family member 2"
 
|gene_description="CUGBP, Elav-like family member 2"
|gene_name=CELF2
+
|gene_id=10659
 +
|gene_name="CUGBP, Elav-like family member 2"
 +
|gene_source=HGNC:2550
 +
|gene_symbol=CELF2
 +
|gene_synonyms=BRUNOL3 Etr-3 NAPOR-2
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 +
|hgnc_mgi_id=HGNC:2550
 
|nearest_ensembl=ENSG00000048740
 
|nearest_ensembl=ENSG00000048740
 
|nearest_promoter_id=NM_001083591
 
|nearest_promoter_id=NM_001083591
 
|nearest_refseq=NM_006561
 
|nearest_refseq=NM_006561
 
|nearest_unigene=Hs.309288
 
|nearest_unigene=Hs.309288
 +
|num_trans=25
 +
|species=human
 +
|start=11165088
 +
|strand=+
 +
|transcript_name=AK297313 AK299992 AF036956
 +
|tss_classification=yes
 
|tss_id=hg_103860.1
 
|tss_id=hg_103860.1
 +
|tss_score=1
 +
|uniprot_id=B4DM66 B4DT00
 
}}
 
}}

Revision as of 20:27, 8 March 2018

Basic information about the TSS


TSS ID:hg_103860.1
Species:human
Chr:chr10
TSS Classification:yes
Start:11165088
End:11165118
Strand:+
TSS Score:1
Start of the center position in the TSS region:
End of the center position in the TSS region:



Gene and protein annotation


Transcript_name:AK297313 AK299992 AF036956
Distance:0
GeneID:10659
HGNC/MGI_ID:HGNC:2550
UniProt_ID:B4DM66 B4DT00
Gene_name:"CUGBP, Elav-like family member 2"
Gene_symbol:CELF2
Gene_synonyms:BRUNOL3 Etr-3 NAPOR-2
Gene_source:HGNC:2550



Transcript annotation


Transcript_name:AK297313 AK299992 AF036956
Distance:0
Num_trans:25
All_trans:AK297313:0 AK299992:0 AF036956:0 ENST00000608830.5:22 uc031vxe.2:22 AK293164:22 ENST00000399850.7:-59 ENST00000417956.6:-59 NM_001025076:-59 NM_001083591:-59 uc057rqu.1:-59 uc031vxf.2:-59 AF432906:60 AK299983:-123 AK316354:160 AK304216:338 ENST00000609870.5:366 ENST00000609692.5:366 uc057rqv.1:366 uc057rqw.1:366 AK310038:366 AK302681:366 ENST00000354897.3:368 uc057rqx.1:368 AK295511:410



TATA-Box annotation


Distance to TSS:73
Nearest PromoterID:NM_001083591
Entrez ID:10659
Nearest Unigene:Hs.309288
Nearest Refseq:NM_006561
Nearest Ensembl:ENSG00000048740
Gene Name:"CUGBP, Elav-like family member 2"
Gene Alias:BRUNOL3
Gene Description:"CUGBP, Elav-like family member 2"
Gene Type:protein-coding
CpG%:0.03
GC%:0.59204
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):