Difference between revisions of "TSS:Hg 103864.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=233 |entrez_id=10659 |gc_percent=0.61194 |gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |gene_description="CUGBP, El...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CELF-2= | ||
| + | |CUG-BP2= | ||
| + | |CUGBP2= | ||
| + | |ETR-3= | ||
| + | |ETR3= | ||
| + | |NAPOR= | ||
| + | |all_trans=AK316354:11 AF432906:-82 ENST00000608830.5:-120 uc031vxe.2:-120 AK293164:-120 AF036956:-146 AK299992:-163 AK297313:-169 AK304216:189 ENST00000609870.5:217 ENST00000609692.5:217 uc057rqv.1:217 uc057rqw.1:217 AK310038:217 AK302681:217 ENST00000354897.3:219 uc057rqx.1:219 ENST00000399850.7:-230 ENST00000417956.6:-230 NM_001025076:-230 NM_001083591:-230 uc057rqu.1:-230 uc031vxf.2:-230 AK295511:261 AK299983:-294 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |distance=11 | ||
|distance_to_tss=233 | |distance_to_tss=233 | ||
| + | |end=11165267 | ||
|entrez_id=10659 | |entrez_id=10659 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
|gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR | |gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR | ||
|gene_description="CUGBP, Elav-like family member 2" | |gene_description="CUGBP, Elav-like family member 2" | ||
| − | |gene_name=CELF2 | + | |gene_id=10659 |
| + | |gene_name="CUGBP, Elav-like family member 2" | ||
| + | |gene_source=HGNC:2550 | ||
| + | |gene_symbol=CELF2 | ||
| + | |gene_synonyms=BRUNOL3 Etr-3 NAPOR-2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2550 | ||
|nearest_ensembl=ENSG00000048740 | |nearest_ensembl=ENSG00000048740 | ||
|nearest_promoter_id=NM_001083591 | |nearest_promoter_id=NM_001083591 | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| + | |num_trans=25 | ||
| + | |species=human | ||
| + | |start=11165259 | ||
| + | |strand=+ | ||
| + | |transcript_name=AK316354 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103864.1 | |tss_id=hg_103864.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:27, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK316354 |
|---|---|
| Distance: | 11 |
| Num_trans: | 25 |
| All_trans: | AK316354:11 AF432906:-82 ENST00000608830.5:-120 uc031vxe.2:-120 AK293164:-120 AF036956:-146 AK299992:-163 AK297313:-169 AK304216:189 ENST00000609870.5:217 ENST00000609692.5:217 uc057rqv.1:217 uc057rqw.1:217 AK310038:217 AK302681:217 ENST00000354897.3:219 uc057rqx.1:219 ENST00000399850.7:-230 ENST00000417956.6:-230 NM_001025076:-230 NM_001083591:-230 uc057rqu.1:-230 uc031vxf.2:-230 AK295511:261 AK299983:-294 |
TATA-Box annotation
| Distance to TSS: | 233 |
|---|---|
| Nearest PromoterID: | NM_001083591 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | "CUGBP, Elav-like family member 2" |
| Gene Alias: | BRUNOL3 |
| Gene Description: | "CUGBP, Elav-like family member 2" |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
