Difference between revisions of "TSS:Hg 103934.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=180 |entrez_id=83643 |gc_percent=0.487562 |gene_alias=- |gene_description=coiled-coil domain containing 3 |gene_name=CCDC3 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000378764.6:3 uc057rtg.1:3 ENST00000263036.9:-137 uc057rtf.1:-137 AK055403:-137 NM_021980:482 NM_001008213:482 NM_001008212:482 NM_001008211:482 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=3 | ||
|distance_to_tss=180 | |distance_to_tss=180 | ||
| + | |end=13099600 | ||
|entrez_id=83643 | |entrez_id=83643 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=coiled-coil domain containing 3 | |gene_description=coiled-coil domain containing 3 | ||
| − | |gene_name= | + | |gene_id=10133 |
| + | |gene_name=optineurin | ||
| + | |gene_source=HGNC:17142 | ||
| + | |gene_symbol=OPTN | ||
| + | |gene_synonyms=FIP-2 FIP2 HIP7 HYPL NRP TFIIIA-INTP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17142 | ||
|nearest_ensembl=ENSG00000151468 | |nearest_ensembl=ENSG00000151468 | ||
|nearest_promoter_id=NM_001282658 | |nearest_promoter_id=NM_001282658 | ||
|nearest_refseq=NM_031455 | |nearest_refseq=NM_031455 | ||
|nearest_unigene=Hs.498720 | |nearest_unigene=Hs.498720 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=13099585 | ||
| + | |strand=+ | ||
|tata_box="55(GTATTTTAAAGC,-,0.00)" | |tata_box="55(GTATTTTAAAGC,-,0.00)" | ||
| + | |transcript_name=ENST00000378764.6 uc057rtg.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103934.1 | |tss_id=hg_103934.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q96CV9 | ||
}} | }} | ||
Revision as of 20:30, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000378764.6 uc057rtg.1 |
|---|---|
| Distance: | 3 |
| Num_trans: | 9 |
| All_trans: | ENST00000378764.6:3 uc057rtg.1:3 ENST00000263036.9:-137 uc057rtf.1:-137 AK055403:-137 NM_021980:482 NM_001008213:482 NM_001008212:482 NM_001008211:482 |
TATA-Box annotation
| Distance to TSS: | 180 |
|---|---|
| Nearest PromoterID: | NM_001282658 |
| Entrez ID: | 83643 |
| Nearest Unigene: | Hs.498720 |
| Nearest Refseq: | NM_031455 |
| Nearest Ensembl: | ENSG00000151468 |
| Gene Name: | optineurin |
| Gene Alias: | - |
| Gene Description: | coiled-coil domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "55(GTATTTTAAAGC,-,0.00)" |
