Difference between revisions of "TSS:Hg 103937.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=52 |entrez_id=10133 |gc_percent=0.781095 |gene_alias=ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP |gene_description=optineurin |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |FIP2= | ||
| + | |GLC1E= | ||
| + | |HIP7= | ||
| + | |HYPL= | ||
| + | |NRP= | ||
| + | |TFIIIA-INTP= | ||
| + | |all_trans=ENST00000487935.1:0 ENST00000482140.5:0 ENST00000378757.6:0 ENST00000430081.5:0 ENST00000378752.7:0 ENST00000378748.7:0 NM_021980:0 NM_001008213:0 NM_001008212:0 NM_001008211:0 uc057rth.1:0 uc057rti.1:0 uc001ilx.2:0 uc057rtj.1:0 uc001ilw.2:0 uc001ily.2:0 AK316171:0 AK303715:0 BC013876:0 BC032762:0 AF061034:17 ENST00000378747.7:32 uc001ilv.2:32 AF420371:32 AF420372:32 AF420373:32 ENST00000378764.6:-473 uc057rtg.1:-473 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=0 | ||
|distance_to_tss=52 | |distance_to_tss=52 | ||
| + | |end=13100193 | ||
|entrez_id=10133 | |entrez_id=10133 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
|gene_alias=ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP | |gene_alias=ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP | ||
|gene_description=optineurin | |gene_description=optineurin | ||
| − | |gene_name=OPTN | + | |gene_id=10133 |
| + | |gene_name=optineurin | ||
| + | |gene_source=HGNC:17142 | ||
| + | |gene_symbol=OPTN | ||
| + | |gene_synonyms=FIP-2 FIP2 HIP7 HYPL NRP TFIIIA-INTP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17142 | ||
|nearest_ensembl=ENSG00000123240 | |nearest_ensembl=ENSG00000123240 | ||
|nearest_promoter_id=NM_001008211 | |nearest_promoter_id=NM_001008211 | ||
|nearest_refseq=NM_021980 | |nearest_refseq=NM_021980 | ||
|nearest_unigene=Hs.332706 | |nearest_unigene=Hs.332706 | ||
| + | |num_trans=28 | ||
| + | |species=human | ||
| + | |start=13100075 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000487935.1 ENST00000482140.5 ENST00000378757.6 ENST00000430081.5 ENST00000378752.7 ENST00000378748.7 NM_021980 NM_001008213 NM_001008212 NM_001008211 uc057rth.1 uc057rti.1 uc001ilx.2 uc057rtj.1 uc001ilw.2 uc001ily.2 AK316171 AK303715 BC013876 BC032762 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103937.1 | |tss_id=hg_103937.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087X2G2 B4E184 B7ZA56 Q96CV9 X6RKL2 | ||
}} | }} | ||
Revision as of 20:30, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000487935.1 ENST00000482140.5 ENST00000378757.6 ENST00000430081.5 ENST00000378752.7 ENST00000378748.7 NM_021980 NM_001008213 NM_001008212 NM_001008211 uc057rth.1 uc057rti.1 uc001ilx.2 uc057rtj.1 uc001ilw.2 uc001ily.2 AK316171 AK303715 BC013876 BC032762 |
|---|---|
| Distance: | 0 |
| Num_trans: | 28 |
| All_trans: | ENST00000487935.1:0 ENST00000482140.5:0 ENST00000378757.6:0 ENST00000430081.5:0 ENST00000378752.7:0 ENST00000378748.7:0 NM_021980:0 NM_001008213:0 NM_001008212:0 NM_001008211:0 uc057rth.1:0 uc057rti.1:0 uc001ilx.2:0 uc057rtj.1:0 uc001ilw.2:0 uc001ily.2:0 AK316171:0 AK303715:0 BC013876:0 BC032762:0 AF061034:17 ENST00000378747.7:32 uc001ilv.2:32 AF420371:32 AF420372:32 AF420373:32 ENST00000378764.6:-473 uc057rtg.1:-473 |
TATA-Box annotation
| Distance to TSS: | 52 |
|---|---|
| Nearest PromoterID: | NM_001008211 |
| Entrez ID: | 10133 |
| Nearest Unigene: | Hs.332706 |
| Nearest Refseq: | NM_021980 |
| Nearest Ensembl: | ENSG00000123240 |
| Gene Name: | optineurin |
| Gene Alias: | ALS12 |
| Gene Description: | optineurin |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
