Difference between revisions of "TSS:Hg 103951.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.065 |distance_to_tss=34 |entrez_id=8559 |gc_percent=0.616915 |gene_alias=PRP18|hPrp18 |gene_description=pre-mRNA processing factor 18 |gene_name=PRP...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000417658.5:0 ENST00000320054.4:0 NM_003675:0 uc057ruk.1:0 uc057rul.1:0 AK314814:0 BC002572:0 U51990:3 BC000794:5 ENST00000378572.7:-7 uc001imp.4:-7 KJ897869:75 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| + | |distance=0 | ||
|distance_to_tss=34 | |distance_to_tss=34 | ||
| + | |end=13587012 | ||
|entrez_id=8559 | |entrez_id=8559 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
|gene_alias=PRP18|hPrp18 | |gene_alias=PRP18|hPrp18 | ||
|gene_description=pre-mRNA processing factor 18 | |gene_description=pre-mRNA processing factor 18 | ||
| − | |gene_name=PRPF18 | + | |gene_id=8559 |
| + | |gene_name=pre-mRNA processing factor 18 | ||
| + | |gene_source=HGNC:17351 | ||
| + | |gene_symbol=PRPF18 | ||
| + | |gene_synonyms=hPrp18 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hPrp18= | ||
| + | |hgnc_mgi_id=HGNC:17351 | ||
|nearest_ensembl=ENSG00000165630 | |nearest_ensembl=ENSG00000165630 | ||
|nearest_promoter_id=NM_003675 | |nearest_promoter_id=NM_003675 | ||
|nearest_refseq=NM_003675 | |nearest_refseq=NM_003675 | ||
|nearest_unigene=Hs.660649 | |nearest_unigene=Hs.660649 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=13586933 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000417658.5 ENST00000320054.4 NM_003675 uc057ruk.1 uc057rul.1 AK314814 BC002572 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103951.1 | |tss_id=hg_103951.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B2RBU0 Q5T9P7 Q5T9P8 Q99633 | ||
}} | }} | ||
Revision as of 20:31, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000417658.5 ENST00000320054.4 NM_003675 uc057ruk.1 uc057rul.1 AK314814 BC002572 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000417658.5:0 ENST00000320054.4:0 NM_003675:0 uc057ruk.1:0 uc057rul.1:0 AK314814:0 BC002572:0 U51990:3 BC000794:5 ENST00000378572.7:-7 uc001imp.4:-7 KJ897869:75 |
TATA-Box annotation
| Distance to TSS: | 34 |
|---|---|
| Nearest PromoterID: | NM_003675 |
| Entrez ID: | 8559 |
| Nearest Unigene: | Hs.660649 |
| Nearest Refseq: | NM_003675 |
| Nearest Ensembl: | ENSG00000165630 |
| Gene Name: | pre-mRNA processing factor 18 |
| Gene Alias: | PRP18 |
| Gene Description: | pre-mRNA processing factor 18 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
