Difference between revisions of "TSS:Hg 104000.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=-90 |entrez_id=10557 |gc_percent=0.626866 |gene_alias=- |gene_description=ribonuclease P/MRP subunit p38 |gene_name=RPP38 |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000378203.5:73 ENST00000616640.1:73 NM_183005:73 NM_001097590:73 NM_006414:73 NM_001265601:73 uc009xjm.5:73 uc031pth.2:73 AK223418:96 ENST00000378201.6:108 uc057rzk.1:108 ENST00000451677.1:130 uc057rzl.1:130 ENST00000378202.5:224 uc001inx.6:224 ENST00000378197.4:275 uc001iny.6:275 AK057006:275 U77664:278 BC029494:292 ENST00000441850.1:313 uc057rzm.1:313 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=73 | ||
|distance_to_tss=-90 | |distance_to_tss=-90 | ||
| + | |end=15097107 | ||
|entrez_id=10557 | |entrez_id=10557 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=ribonuclease P/MRP subunit p38 | |gene_description=ribonuclease P/MRP subunit p38 | ||
| − | |gene_name=RPP38 | + | |gene_id=10557 |
| + | |gene_name=ribonuclease P/MRP 38kDa subunit | ||
| + | |gene_source=HGNC:30329 | ||
| + | |gene_symbol=RPP38 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:30329 | ||
|nearest_ensembl=ENSG00000152464 | |nearest_ensembl=ENSG00000152464 | ||
|nearest_promoter_id=NM_183005 | |nearest_promoter_id=NM_183005 | ||
|nearest_refseq=NM_006414 | |nearest_refseq=NM_006414 | ||
|nearest_unigene=Hs.94986 | |nearest_unigene=Hs.94986 | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=15097072 | ||
| + | |strand=+ | ||
|tata_box="72(GAGTCTAAAAGA,-,0.00)" | |tata_box="72(GAGTCTAAAAGA,-,0.00)" | ||
| + | |transcript_name=ENST00000378203.5 ENST00000616640.1 NM_183005 NM_001097590 NM_006414 NM_001265601 uc009xjm.5 uc031pth.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104000.1 | |tss_id=hg_104000.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P78345 | ||
}} | }} | ||
Revision as of 20:33, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000378203.5 ENST00000616640.1 NM_183005 NM_001097590 NM_006414 NM_001265601 uc009xjm.5 uc031pth.2 |
|---|---|
| Distance: | 73 |
| Num_trans: | 22 |
| All_trans: | ENST00000378203.5:73 ENST00000616640.1:73 NM_183005:73 NM_001097590:73 NM_006414:73 NM_001265601:73 uc009xjm.5:73 uc031pth.2:73 AK223418:96 ENST00000378201.6:108 uc057rzk.1:108 ENST00000451677.1:130 uc057rzl.1:130 ENST00000378202.5:224 uc001inx.6:224 ENST00000378197.4:275 uc001iny.6:275 AK057006:275 U77664:278 BC029494:292 ENST00000441850.1:313 uc057rzm.1:313 |
TATA-Box annotation
| Distance to TSS: | -90 |
|---|---|
| Nearest PromoterID: | NM_183005 |
| Entrez ID: | 10557 |
| Nearest Unigene: | Hs.94986 |
| Nearest Refseq: | NM_006414 |
| Nearest Ensembl: | ENSG00000152464 |
| Gene Name: | ribonuclease P/MRP 38kDa subunit |
| Gene Alias: | - |
| Gene Description: | ribonuclease P/MRP subunit p38 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "72(GAGTCTAAAAGA,-,0.00)" |
